Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_029107.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq7292 217 4e-52 >seq7292 Length=1256 Score = 217 bits (240), Expect = 4e-52 Identities = 342/488 (70%), Gaps = 4/488 (1%) Strand=Plus/Plus Query 18011 CTGGAACTGGTATGAGGTCCGCGACGCCGCCCACGCCCAGGCGTTCACCGTGGCCAAGGT 18070 |||| | ||| | || | | ||| || ||||||| ||| ||||||||||| ||||||| Sbjct 380 CTGGGATTGGCAGGACATGCTCGATGCGGCCCACGACCAAGCGTTCACCGTTGCCAAGGC 439 Query 18071 GGCGCGCATGGACGTGCTGCAGGACATCCGCGATGCGGTGGAGGCCAGCCTGGAGAAAGG 18130 |||| |||| |||| |||||||||||| | ||||| | |||| || |||| Sbjct 440 CATGCGCCTGGATCTGCTCTCGGACATCCGCGAATCATTGGAGAGCGCCCTGCAGGAAGG 499 Query 18131 GTGGAGCCTGGGCCAATTCAAGAAGAACCTGACGCCGGTCCTGCAGGCAAGGGGATGGTG 18190 || |||| || |||| ||| | ||| ||| |||||| || | || ||||| Sbjct 500 CAAGACCCTGCAGCAGTTCACCAAGGAACTGCAGCCTGTCCTGGAGCAACAAGGTTGGTG 559 Query 18191 GGGCAAGCAGGTCATCGTGGATTCGCAGGGCGGTGCCGAGATGGCCCAGCTGGGCAGCCC 18250 ||||||||||||| | || || |||||| ||| ||||||| ||||||||| ||||| Sbjct 560 GGGCAAGCAGGTCCTGGTCGACAGCCAGGGCAATGCGGAGATGGTCCAGCTGGGTAGCCC 619 Query 18251 ACGCCGGCTGGAGACCATCTATCGGACGAACATACAGAGCGCCATGATGGCGGCCCGCTA 18310 ||||||||| |||| ||||| | ||| ||| | ||||||||| ||||| | ||| Sbjct 620 ACGCCGGCTTAAGACGATCTACCAGACCAACCTGCAGAGCGCCTATATGGCCGGTCGC-- 677 Query 18311 CAAGCAG--ATGCTGGCCAATGTCCGCTTCCGGCCCTACTGGCAGTACATCGCCGTGATG 18368 || | | ||| || || ||| || || |||||| |||||||| |||||| Sbjct 678 AAATCCGCCATGGAGGACACGGTCGAGACCCATCCGTACTGGAGCTACATCGCGGTGATG 737 Query 18369 GACGGTCGCACGCGCCCGTCGCACGCGGCGCTGCATGGCCGGGTGTACCGCTATGACGAT 18428 || || || || || || || ||||| | || ||||||||| ||||||| Sbjct 738 GATGGCAAGACCCGACCTAGCCATGCTGCGCTCAACGGTGTGGTGTACCGACATGACGAC 797 Query 18429 CCCATTTGGCAGTACCTGTTTCCGCCCAACGGTTACAACTGCCGATGCCGGGTCGTGGCG 18488 || || ||| | | || ||||||||||| | |||||||| ||||| || |||| Sbjct 798 CCGATCTGGTCCACCATCTTCCCGCCCAACGGGTTTAACTGCCGCTGCCGCGTAACGGCG 857 Query 18489 CTGTCCGA 18496 ||||| || Sbjct 858 CTGTCTGA 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133747214274464