Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq114929 178 6e-40 seq4104 87.8 9e-13 >seq114929 Length=4696 Score = 178 bits (196), Expect = 6e-40 Identities = 534/816 (65%), Gaps = 44/816 (5%) Strand=Plus/Plus Query 1639 TCAACAATATTGAAGAGCTGGGGCTGGGATTTATCAACTATTCACTGGTGCCGTATCTGA 1698 ||||||||||||| | ||||| || |||| | ||||||||||||||||| ||| ||| Sbjct 3308 TCAACAATATTGAGCATATGGGGATGTCATTTGTGAACTATTCACTGGTGCCTTATATGA 3367 Query 1699 CCCGCATCGAACAGCGGATCAACACCGGACTGGT--ACGAAAAAGTAAGCAGGGCGTTTT 1756 | || || || ||| ||||| || ||| | | | | | | ||| | || Sbjct 3368 CACGAATTGAGTCGCGCATCAAAGTTGGTCTGATCAAGCCAGATGAACGCAAAAAATATT 3427 Query 1757 TTACGCCAAATTTAACGCGGGGGCGTTACTGCGTGGGGATGTGAAGTCCCGTTTTGAAGC 1816 | || || ||||| || || || | | ||||| ||| |||| || |||| |||| | Sbjct 3428 AT--GCAAAGTTTAATGCTGGAGCCCTTTTACGTGGTGATTTGAAATCACGTTATGAATC 3485 Query 1817 CTATGCCACCGGGATCAACTGGGGGATTTACTC--TCCCAATGACTGCCGCGACCTGGAA 1874 |||| || || ||| | ||||| ||| ||| ||| ||||| || || | || Sbjct 3486 TTATGGCAAAGGTATCCAATGGGG--TTTTCTCAGTCCGAATGATGTACGTGAGTTAGAG 3543 Query 1875 GATATGAATCCGCGTCCCGGTGGCGATGTCTATCTCACACCGATGAACATGACCACGAAA 1934 |||||| |||| ||| |||||| ||||| ||||| || || ||||| ||||| || | Sbjct 3544 GATATGGATCCTCGTGACGGTGGTGATGTTTATCTAACGCCTATGAATATGACGACAGAT 3603 Query 1935 CCCTCCGATGGCAGTAAAGCCGGTAAGCAGAAGGATAACGCCAATGCAGACGAAACAACG 1994 || || | || ||||| ||| ||| || ||| | Sbjct 3604 CC----------AGAAGAG--GGTAA--AGATGGA------------AGTT-AAATA--- 3633 Query 1995 TCTTGATGTACCGCTGAGTCTTAAATCTGTCAGTGACTCCGGTGAGTTTGAAGGGTATGG 2054 | | |||| ||||| | ||||||||||| ||| | |||||||||||||| |||| Sbjct 3634 TTTAAATGTTCCGCTAAAAATTAAATCTGTCTCTGAAACAGGTGAGTTTGAAGGATATGC 3693 Query 2055 CTCCGTCTTTGGTGTAAAGGACAGCCACGATGATGTGGTGATGTCCGGGG--CATTTGCT 2112 || || |||| ||| | || || || ||| | || |||||| || |||| Sbjct 3694 ATCTGTTTTTGATGTCATTGATAGTTACAGCGATATCGT--TGTCCGAGGTGCATTCCAA 3751 Query 2113 GCTTCCCTGCGGGAGTGGAGTG-ACAGAAAAGCGTTACCTGCGCTGCTCTGGCAGCACCG 2171 || || || || | | | | || ||| ||||| | |||| ||||||||| Sbjct 3752 AAATCTCT-CGAACGTTGGGCGGAGCGAGAAGATTTACCCTCAGTGCTGTGGCAGCACAA 3810 Query 2172 CATGGATGAGCCCATCGGTGTTTACACCGAAATGAAGGAAGACGATGTCGGGCTTTACGT 2231 |||| ||||| || || | ||| |||||||| || || ||| ||| |||| || Sbjct 3811 AATGGCAGAGCCTATTGGACCATTCACAGAAATGAAAGAGGATGATTACGGACTTTTTGT 3870 Query 2232 TAAGGGGCGATTGCTCATTGATGATGATCCCCTGGCAAAACGCGCACATGCACACATGAA 2291 | || || || || |||||||||||||| |||| ||||| |||||||| || ||||| Sbjct 3871 TCGTGGTCGTTTACTTATTGATGATGATCCATTGGCCAAACGAGCACATGCTCATATGAA 3930 Query 2292 GGCCGGTTCATTAACCGGCCTTTCTATTGGGTACGTATTGAAAGACTGGGAATACGACCG 2351 || || | | || | || ||||| ||| | | ||||| |||||||| ||| Sbjct 3931 AGCTGGCAGTGTCAAAGGAATGTCGATTGGTTACATGCTCAAAGATTGGGAATATGACTC 3990 Query 2352 GAGCAAAGAAGCCTTTCTGCTGAAAGAAATCGACCTCTGGGAAGTCAGTCTGGTGACGTT 2411 |||| || || | || |||||||| || || |||||||| | | |||||| | Sbjct 3991 TGCAAAAGGTGCATTCTTACTTAAAGAAATTGATCTGTGGGAAGTGTCTATTGTGACGAT 4050 Query 2412 CCCGTCAAACGATGAGGCACGGATCAGCGACGTCAA 2447 || | || ||| ||| ||| | ||| || || Sbjct 4051 GCCCGCTAATACTGAAGCAAAGATTACCGAGGTGAA 4086 Score = 178 bits (196), Expect = 6e-40 Identities = 534/816 (65%), Gaps = 44/816 (5%) Strand=Plus/Plus Query 41225 TCAACAATATTGAAGAGCTGGGGCTGGGATTTATCAACTATTCACTGGTGCCGTATCTGA 41284 ||||||||||||| | ||||| || |||| | ||||||||||||||||| ||| ||| Sbjct 3308 TCAACAATATTGAGCATATGGGGATGTCATTTGTGAACTATTCACTGGTGCCTTATATGA 3367 Query 41285 CCCGCATCGAACAGCGGATCAACACCGGACTGGT--ACGAAAAAGTAAGCAGGGCGTTTT 41342 | || || || ||| ||||| || ||| | | | | | | ||| | || Sbjct 3368 CACGAATTGAGTCGCGCATCAAAGTTGGTCTGATCAAGCCAGATGAACGCAAAAAATATT 3427 Query 41343 TTACGCCAAATTTAACGCGGGGGCGTTACTGCGTGGGGATGTGAAGTCCCGTTTTGAAGC 41402 | || || ||||| || || || | | ||||| ||| |||| || |||| |||| | Sbjct 3428 AT--GCAAAGTTTAATGCTGGAGCCCTTTTACGTGGTGATTTGAAATCACGTTATGAATC 3485 Query 41403 CTATGCCACCGGGATCAACTGGGGGATTTACTC--TCCCAATGACTGCCGCGACCTGGAA 41460 |||| || || ||| | ||||| ||| ||| ||| ||||| || || | || Sbjct 3486 TTATGGCAAAGGTATCCAATGGGG--TTTTCTCAGTCCGAATGATGTACGTGAGTTAGAG 3543 Query 41461 GATATGAATCCGCGTCCCGGTGGCGATGTCTATCTCACACCGATGAACATGACCACGAAA 41520 |||||| |||| ||| |||||| ||||| ||||| || || ||||| ||||| || | Sbjct 3544 GATATGGATCCTCGTGACGGTGGTGATGTTTATCTAACGCCTATGAATATGACGACAGAT 3603 Query 41521 CCCTCCGATGGCAGTAAAGCCGGTAAGCAGAAGGATAACGCCAATGCAGACGAAACAACG 41580 || || | || ||||| ||| ||| || ||| | Sbjct 3604 CC----------AGAAGAG--GGTAA--AGATGGA------------AGTT-AAATA--- 3633 Query 41581 TCTTGATGTACCGCTGAGTCTTAAATCTGTCAGTGACTCCGGTGAGTTTGAAGGGTATGG 41640 | | |||| ||||| | ||||||||||| ||| | |||||||||||||| |||| Sbjct 3634 TTTAAATGTTCCGCTAAAAATTAAATCTGTCTCTGAAACAGGTGAGTTTGAAGGATATGC 3693 Query 41641 CTCCGTCTTTGGTGTAAAGGACAGCCACGATGATGTGGTGATGTCCGGGG--CATTTGCT 41698 || || |||| ||| | || || || ||| | || |||||| || |||| Sbjct 3694 ATCTGTTTTTGATGTCATTGATAGTTACAGCGATATCGT--TGTCCGAGGTGCATTCCAA 3751 Query 41699 GCTTCCCTGCGGGAGTGGAGTG-ACAGAAAAGCGTTACCTGCGCTGCTCTGGCAGCACCG 41757 || || || || | | | | || ||| ||||| | |||| ||||||||| Sbjct 3752 AAATCTCT-CGAACGTTGGGCGGAGCGAGAAGATTTACCCTCAGTGCTGTGGCAGCACAA 3810 Query 41758 CATGGATGAGCCCATCGGTGTTTACACCGAAATGAAGGAAGACGATGTCGGGCTTTACGT 41817 |||| ||||| || || | ||| |||||||| || || ||| ||| |||| || Sbjct 3811 AATGGCAGAGCCTATTGGACCATTCACAGAAATGAAAGAGGATGATTACGGACTTTTTGT 3870 Query 41818 TAAGGGGCGATTGCTCATTGATGATGATCCCCTGGCAAAACGCGCACATGCACACATGAA 41877 | || || || || |||||||||||||| |||| ||||| |||||||| || ||||| Sbjct 3871 TCGTGGTCGTTTACTTATTGATGATGATCCATTGGCCAAACGAGCACATGCTCATATGAA 3930 Query 41878 GGCCGGTTCATTAACCGGCCTTTCTATTGGGTACGTATTGAAAGACTGGGAATACGACCG 41937 || || | | || | || ||||| ||| | | ||||| |||||||| ||| Sbjct 3931 AGCTGGCAGTGTCAAAGGAATGTCGATTGGTTACATGCTCAAAGATTGGGAATATGACTC 3990 Query 41938 GAGCAAAGAAGCCTTTCTGCTGAAAGAAATCGACCTCTGGGAAGTCAGTCTGGTGACGTT 41997 |||| || || | || |||||||| || || |||||||| | | |||||| | Sbjct 3991 TGCAAAAGGTGCATTCTTACTTAAAGAAATTGATCTGTGGGAAGTGTCTATTGTGACGAT 4050 Query 41998 CCCGTCAAACGATGAGGCACGGATCAGCGACGTCAA 42033 || | || ||| ||| ||| | ||| || || Sbjct 4051 GCCCGCTAATACTGAAGCAAAGATTACCGAGGTGAA 4086 >seq4104 Length=1574 Score = 87.8 bits (96), Expect = 9e-13 Identities = 173/255 (68%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 43138 AAAGATACCGAGGGTAACTATCTGTGGCGTCCGGGGCTGGAACTGGGACAGCCATCC--- 43194 ||||| | || || |||||| | |||| || || || || |||||||||||| Sbjct 1047 AAAGACAGTGAAGGCAACTATTTATGGCAACCTGGTCTTCAAGCTGGACAGCCATCCGTG 988 Query 43195 TCACTGGCGGGTTACGGTATCGCTGAAAACGAACAGATGCCGGATATCGCCGCCGATGCG 43254 | ||| ||||| || || | |||||| | | ||||| || | || ||||| Sbjct 987 TTACT---TGGTTATGGAATTGAAGAAAACAATGACATGCCAGAAGCTGAAGCTGATGCA 931 Query 43255 AAAGCCATTGCGTTTGGTAACTTCAAACGGGGTTACACCATCGTTGACCGTATCGGCACC 43314 || | || |||||| | || ||||| | ||| || || || || ||||| || || Sbjct 930 AATTCAATCTTATTTGGTGATTTTAAACGTGCTTATACGATTGTAGATCGTATGGGTACT 871 Query 43315 CGCATCCTGCGCGACCCGTACACCAACAAACCGTTTGTCGGTTTTTATACCACCAAGCGC 43374 || || |||| || || | || |||||||| | ||| || |||||||| ||||| || Sbjct 870 CGTATTTTGCGAGATCCATTTACTAACAAACCTTATGTTGGGTTTTATACAACCAAACGT 811 Query 43375 ACCGGGGGTATGCTG 43389 || || || ||| || Sbjct 810 ACTGGTGGAATGTTG 796 Score = 87.8 bits (96), Expect = 9e-13 Identities = 173/255 (68%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 3553 AAAGATACCGAGGGTAACTATCTGTGGCGTCCGGGGCTGGAACTGGGACAGCCATCC--- 3609 ||||| | || || |||||| | |||| || || || || |||||||||||| Sbjct 1047 AAAGACAGTGAAGGCAACTATTTATGGCAACCTGGTCTTCAAGCTGGACAGCCATCCGTG 988 Query 3610 TCACTGGCGGGTTACGGTATCGCTGAAAACGAACAGATGCCGGATATCGCCGCCGATGCG 3669 | ||| ||||| || || | |||||| | | ||||| || | || ||||| Sbjct 987 TTACT---TGGTTATGGAATTGAAGAAAACAATGACATGCCAGAAGCTGAAGCTGATGCA 931 Query 3670 AAAGCCATTGCGTTTGGTAACTTCAAACGGGGTTACACCATCGTTGACCGTATCGGCACC 3729 || | || |||||| | || ||||| | ||| || || || || ||||| || || Sbjct 930 AATTCAATCTTATTTGGTGATTTTAAACGTGCTTATACGATTGTAGATCGTATGGGTACT 871 Query 3730 CGCATCCTGCGCGACCCGTACACCAACAAACCGTTTGTCGGTTTTTATACCACCAAGCGC 3789 || || |||| || || | || |||||||| | ||| || |||||||| ||||| || Sbjct 870 CGTATTTTGCGAGATCCATTTACTAACAAACCTTATGTTGGGTTTTATACAACCAAACGT 811 Query 3790 ACCGGGGGTATGCTG 3804 || || || ||| || Sbjct 810 ACTGGTGGAATGTTG 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 246826665253504