Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq147352 372 5e-101 seq12796 167 4e-39 >seq147352 Length=942 Score = 372 bits (412), Expect = 5e-101 Identities = 233/247 (94%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 203 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 260 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 261 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 320 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCG--CGCGTGC 178 ||||| | ||||||| |||| ||||||||||||||||||||||||||||| ||||||| Sbjct 321 CCCGGGCATGTCGGCTAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCTCGCGTGC 380 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| Sbjct 381 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAATTTCCTTGGCATAAG 440 Query 239 AGGCCAT 245 |||||| Sbjct 441 CGGCCAT 447 >seq12796 Length=984 Score = 167 bits (184), Expect = 4e-39 Identities = 176/226 (78%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||| ||| ||||| ||| ||||| |||||| | Sbjct 585 GTACAAAGGGCAGGGACGTAATCAAGGCGTGCTA-ATGACACGCCTTTACTGGGAATT-C 642 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||| ||| | ||||| | ||||| | ||||| | || Sbjct 643 CTCGTTCATGTGGAACAATTTCAAGCCACAATCCCAAGCACGAAGGTGTTTCAGCGGGTT 702 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||||| || |||| || ||| | || ||||||||||||||| Sbjct 703 ACCCGAGCCTCTCGGCCAGGGA---AGACACGCTGACACCTCCATTGTAGCGCGCGTGCG 759 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 760 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750464467700