Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06]
210,780 sequences; 203,686,407 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq147352 372 5e-101
seq12796 167 4e-39
>seq147352
Length=942
Score = 372 bits (412), Expect = 5e-101
Identities = 233/247 (94%), Gaps = 4/247 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 203 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 260
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 320
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCG--CGCGTGC 178
||||| | ||||||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct 321 CCCGGGCATGTCGGCTAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCTCGCGTGC 380
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 381 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAATTTCCTTGGCATAAG 440
Query 239 AGGCCAT 245
||||||
Sbjct 441 CGGCCAT 447
>seq12796
Length=984
Score = 167 bits (184), Expect = 4e-39
Identities = 176/226 (78%), Gaps = 7/226 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||| ||| ||| ||||| ||| ||||| |||||| |
Sbjct 585 GTACAAAGGGCAGGGACGTAATCAAGGCGTGCTA-ATGACACGCCTTTACTGGGAATT-C 642
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | ||||||| ||| | ||||| | ||||| | ||||| | ||
Sbjct 643 CTCGTTCATGTGGAACAATTTCAAGCCACAATCCCAAGCACGAAGGTGTTTCAGCGGGTT 702
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| ||||||| || |||| || ||| | || |||||||||||||||
Sbjct 703 ACCCGAGCCTCTCGGCCAGGGA---AGACACGCTGACACCTCCATTGTAGCGCGCGTGCG 759
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 760 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 750464467700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |