Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq46077 149 1e-33 seq124117 138 2e-30 seq124302 114 2e-23 seq117092 82.4 1e-13 >seq46077 Length=505 Score = 149 bits (164), Expect = 1e-33 Identities = 166/217 (76%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 103 GCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTT 162 ||||| ||||| | |||||| |||||||||||||||||||||| | ||||||||||| Sbjct 1 GCAGG--TTTGCCTGCATACATCTGCATGGAATAATAGAATAGGACTT-CGGTTCTATTT 57 Query 163 TGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCA 221 ||||||||| | ||| | |||||||| ||| | || || |||||| | ||||| Sbjct 58 TGTTGGTTTTCGGAACCAGAAGTAATGATGAATGGAGACAGGCGGGGGCATTCGTATTGC 117 Query 222 ATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCA 281 || ||||||||||||||||||| ||||| ||| |||||||| || ||| Sbjct 118 GACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGCACTGAAGCGAAAGCATTTGCCA 177 Query 282 AGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||| || || |||| |||||||||||| ||| Sbjct 178 AGGATGTTCTCGTTGATCA-AGAACGAAAGTTATGGG 213 >seq124117 Length=1427 Score = 138 bits (152), Expect = 2e-30 Identities = 154/203 (76%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| ||||||||||||| |||||| || | ||| | |||||||||||| Sbjct 808 CTATTACTTTGAAGAAATTAGAGTGTTTAAAGCAAGCTTACCCTCTAGATACATTAGCAT 867 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | ||| | | |||| ||||| ||||| | | | || |||||||| Sbjct 868 GGGATAACATCAGAGG-CTTTCGGTCATATTTCGTTGGCCTTCGGAATCGGAGTAATGAT 926 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| |||| |||| | ||| | || |||||||||||||||||| |||||| Sbjct 927 TAACAGGGACAGTCAGGGGCATTCGTAGTTCATAGTCAGAGGTGAAATTCTTAAATTTAT 986 Query 251 TGAAGACTAACTACTGCGAAAGC 273 || || ||| |||| |||||| Sbjct 987 GAAATACGAACAACTGTGAAAGC 1009 >seq124302 Length=813 Score = 114 bits (126), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 14/204 (7%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||||| |||||| || | ||| | |||||||||||| Sbjct 433 CTATTACTTTGAAGAAATTAGAGTGTTTAAAGCAAGCTTACCCTCTGGATACATTAGCAT 492 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG-TTTCTAGGACCGCCGTAATGA 189 || |||| | ||||| | |||| ||||| ||||| ||| | | || ||||||| Sbjct 493 GGGATAACATCATAGG-TTTTCGGTCATATTTCGTTGGCCTTCGA-AATCGGAGTAATGA 550 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| |||| | || ||||| || ||||||| |||||||||| |||||| Sbjct 551 TTAACAGGGGCATTC----------GTATTTCATAGTCAGAGATGAAATTCTTAGATTTA 600 Query 250 TTGAAGACTAACTACTGCGAAAGC 273 | || || ||| |||| |||||| Sbjct 601 TGAAATACGAACAACTGTGAAAGC 624 >seq117092 Length=1163 Score = 82.4 bits (90), Expect = 1e-13 Identities = 72/89 (81%), Gaps = 7/89 (8%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAA-----GCAGGCCTTTGCTCGAA 119 ||| | || ||||||||||| ||||||||||| ||||| ||||| ||||| | | Sbjct 89 GCCGGCACGTTTACTTTGAACAAATTAGAGTGCTCAAAATATGGCAGG--TTTGCCTGCA 32 Query 120 TACATTAGCATGGAATAATAGAATAGGAC 148 ||||| |||||||||||||||||||||| Sbjct 31 TACATCTGCATGGAATAATAGAATAGGAC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913270941440