Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06]
210,780 sequences; 203,686,407 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq46077 149 1e-33
seq124117 138 2e-30
seq124302 114 2e-23
seq117092 82.4 1e-13
>seq46077
Length=505
Score = 149 bits (164), Expect = 1e-33
Identities = 166/217 (76%), Gaps = 5/217 (2%)
Strand=Plus/Plus
Query 103 GCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTT 162
||||| ||||| | |||||| |||||||||||||||||||||| | |||||||||||
Sbjct 1 GCAGG--TTTGCCTGCATACATCTGCATGGAATAATAGAATAGGACTT-CGGTTCTATTT 57
Query 163 TGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCA 221
||||||||| | ||| | |||||||| ||| | || || |||||| | |||||
Sbjct 58 TGTTGGTTTTCGGAACCAGAAGTAATGATGAATGGAGACAGGCGGGGGCATTCGTATTGC 117
Query 222 ATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCA 281
|| ||||||||||||||||||| ||||| ||| |||||||| || |||
Sbjct 118 GACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGCACTGAAGCGAAAGCATTTGCCA 177
Query 282 AGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|||||||| || || |||| |||||||||||| |||
Sbjct 178 AGGATGTTCTCGTTGATCA-AGAACGAAAGTTATGGG 213
>seq124117
Length=1427
Score = 138 bits (152), Expect = 2e-30
Identities = 154/203 (76%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130
|| |||||||||| ||||||||||||| |||||| || | ||| | ||||||||||||
Sbjct 808 CTATTACTTTGAAGAAATTAGAGTGTTTAAAGCAAGCTTACCCTCTAGATACATTAGCAT 867
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | | ||| | | |||| ||||| ||||| | | | || ||||||||
Sbjct 868 GGGATAACATCAGAGG-CTTTCGGTCATATTTCGTTGGCCTTCGGAATCGGAGTAATGAT 926
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| |||| |||| | ||| | || |||||||||||||||||| ||||||
Sbjct 927 TAACAGGGACAGTCAGGGGCATTCGTAGTTCATAGTCAGAGGTGAAATTCTTAAATTTAT 986
Query 251 TGAAGACTAACTACTGCGAAAGC 273
|| || ||| |||| ||||||
Sbjct 987 GAAATACGAACAACTGTGAAAGC 1009
>seq124302
Length=813
Score = 114 bits (126), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 14/204 (7%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||||| |||||| || | ||| | ||||||||||||
Sbjct 433 CTATTACTTTGAAGAAATTAGAGTGTTTAAAGCAAGCTTACCCTCTGGATACATTAGCAT 492
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG-TTTCTAGGACCGCCGTAATGA 189
|| |||| | ||||| | |||| ||||| ||||| ||| | | || |||||||
Sbjct 493 GGGATAACATCATAGG-TTTTCGGTCATATTTCGTTGGCCTTCGA-AATCGGAGTAATGA 550
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||| |||| | || ||||| || ||||||| |||||||||| ||||||
Sbjct 551 TTAACAGGGGCATTC----------GTATTTCATAGTCAGAGATGAAATTCTTAGATTTA 600
Query 250 TTGAAGACTAACTACTGCGAAAGC 273
| || || ||| |||| ||||||
Sbjct 601 TGAAATACGAACAACTGTGAAAGC 624
>seq117092
Length=1163
Score = 82.4 bits (90), Expect = 1e-13
Identities = 72/89 (81%), Gaps = 7/89 (8%)
Strand=Plus/Minus
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAA-----GCAGGCCTTTGCTCGAA 119
||| | || ||||||||||| ||||||||||| ||||| ||||| ||||| | |
Sbjct 89 GCCGGCACGTTTACTTTGAACAAATTAGAGTGCTCAAAATATGGCAGG--TTTGCCTGCA 32
Query 120 TACATTAGCATGGAATAATAGAATAGGAC 148
||||| ||||||||||||||||||||||
Sbjct 31 TACATCTGCATGGAATAATAGAATAGGAC 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 913270941440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |