Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06]
210,780 sequences; 203,686,407 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq136401 145 3e-32
seq108625 80.6 1e-12
seq109250 77.0 1e-11
>seq136401
Length=1984
Score = 145 bits (160), Expect = 3e-32
Identities = 104/120 (87%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||||| |||||||||||||||||||||||||| ||||||||| ||| |||||| |||
Sbjct 1034 TGTTGGTACCCGAAAGATGGTGAACTATGCCTGGCCAGGGTGAAGTCAGGGGAAACCCTG 975
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| || || |||| ||||| |||||||||||||||||| | |||||||||||||||
Sbjct 974 ATGGAAGCCCGTAGCGATTCTGACGTGCAAATCGATCGTCAGAGCTGGGTATAGGGGCGA 915
Score = 123 bits (136), Expect = 1e-25
Identities = 117/147 (80%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| ||| ||| ||||||| |||| ||| |||||| | | ||||| |||||||
Sbjct 1721 GAGTCGGTTTGCTTGAAAATGCAGACCTAAGAGGGTGGTAAACTCCATCTAAGGCTAAAT 1662
Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| |
Sbjct 1661 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 1603
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185
|||||||| || || |||||||| ||
Sbjct 1602 GAGAGAGTTCAAGAGTACGTGAAACTG 1576
>seq108625
Length=306
Score = 80.6 bits (88), Expect = 1e-12
Identities = 77/98 (79%), Gaps = 3/98 (3%)
Strand=Plus/Minus
Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643
|||||||||||||| ||| ||||| |||||||||||| || ||||| | ||| | |
Sbjct 273 TGAACTATGCCTGAGCGGGGCGAAGCTAGAGGAAACTCTTGTTGAGGC---CCGCGATAC 217
Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|| |||| |||| | ||||| |||||||||| || ||
Sbjct 216 TGACGTGTAAATTGTTCGTCTGATTTGGGTATTGGAGC 179
>seq109250
Length=305
Score = 77.0 bits (84), Expect = 1e-11
Identities = 76/98 (78%), Gaps = 3/98 (3%)
Strand=Plus/Minus
Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643
|||||||||||||| ||| ||||| |||||||||||| || ||||| | || | |
Sbjct 272 TGAACTATGCCTGAGCGGGGCGAAGCTAGAGGAAACTCTTGTCGAGGC---CCACGATAC 216
Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|| ||| |||| | ||||| ||||||||||||| ||
Sbjct 215 TGAAGTGTAAATTGTTCGTCTGATTTGGGTATAGGAGC 178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2075478769000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |