Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq136401 145 3e-32 seq108625 80.6 1e-12 seq109250 77.0 1e-11 >seq136401 Length=1984 Score = 145 bits (160), Expect = 3e-32 Identities = 104/120 (87%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||||| |||||||||||||||||||||||||| ||||||||| ||| |||||| ||| Sbjct 1034 TGTTGGTACCCGAAAGATGGTGAACTATGCCTGGCCAGGGTGAAGTCAGGGGAAACCCTG 975 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || || |||| ||||| |||||||||||||||||| | ||||||||||||||| Sbjct 974 ATGGAAGCCCGTAGCGATTCTGACGTGCAAATCGATCGTCAGAGCTGGGTATAGGGGCGA 915 Score = 123 bits (136), Expect = 1e-25 Identities = 117/147 (80%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| ||||||| |||| ||| |||||| | | ||||| ||||||| Sbjct 1721 GAGTCGGTTTGCTTGAAAATGCAGACCTAAGAGGGTGGTAAACTCCATCTAAGGCTAAAT 1662 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| | Sbjct 1661 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 1603 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185 |||||||| || || |||||||| || Sbjct 1602 GAGAGAGTTCAAGAGTACGTGAAACTG 1576 >seq108625 Length=306 Score = 80.6 bits (88), Expect = 1e-12 Identities = 77/98 (79%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||||||||| ||| ||||| |||||||||||| || ||||| | ||| | | Sbjct 273 TGAACTATGCCTGAGCGGGGCGAAGCTAGAGGAAACTCTTGTTGAGGC---CCGCGATAC 217 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || |||| |||| | ||||| |||||||||| || || Sbjct 216 TGACGTGTAAATTGTTCGTCTGATTTGGGTATTGGAGC 179 >seq109250 Length=305 Score = 77.0 bits (84), Expect = 1e-11 Identities = 76/98 (78%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||||||||| ||| ||||| |||||||||||| || ||||| | || | | Sbjct 272 TGAACTATGCCTGAGCGGGGCGAAGCTAGAGGAAACTCTTGTCGAGGC---CCACGATAC 216 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || ||| |||| | ||||| ||||||||||||| || Sbjct 215 TGAAGTGTAAATTGTTCGTCTGATTTGGGTATAGGAGC 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2075478769000