Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06]
210,780 sequences; 203,686,407 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq169444 141 3e-31
seq812 107 6e-21
>seq169444
Length=2898
Score = 141 bits (156), Expect = 3e-31
Identities = 119/145 (82%), Gaps = 1/145 (1%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 213 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGTACAAGCGGTGGAGCAT 154
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| || ||||||||||||| | |||||| | || ||||
Sbjct 153 GTGGTTTAATTCGATGCAAAGCAAAGAACCTTACCAGGGCATGACATGCCGCGAATCCTC 94
Query 121 TAGAGATAGAGGTTTCCCCTTCGGG 145
| || | ||||| | ||||||||
Sbjct 93 TTGAAAAAGAGGGGT-GCCTTCGGG 70
>seq812
Length=2997
Score = 107 bits (118), Expect = 6e-21
Identities = 73/82 (89%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215
||||||| ||||||| ||||||||||| ||| ||| || |||||||||||||||||||||
Sbjct 111 ACAGGTGGTGCATGGCTGTCGTCAGCTTGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAAC 52
Query 216 GAGCGCAACCCTTAAGCTTAGT 237
||||||||||||| | |||||
Sbjct 51 GAGCGCAACCCTTGTGTTTAGT 30
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1500829868800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |