Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq12796 214 3e-53 seq117635 154 2e-35 seq147352 116 6e-24 >seq12796 Length=984 Score = 214 bits (236), Expect = 3e-53 Identities = 197/246 (80%), Gaps = 15/246 (6%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 742 CATTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 800 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----------CCAGCCAC-C 124 | || | |||| ||||| | |||||||||||||| || || | | Sbjct 801 ATCTCGTAC-GGCTAAAAGCCGTTTGTCCCTCTAAGAAGATTTGTCATCGCCGGCTGCAC 859 Query 125 AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | || || | |||||||| ||| | |||||||||||||||| |||||| || Sbjct 860 AAGGA-AGCCGGACCGACTATTTAGTAGGCCAGAGTCTCGTTCGTTATCGCAATTAAGCA 918 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 919 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACTAAATCAAGAAAGA 978 Query 245 GCTATC 250 ||| || Sbjct 979 GCTTTC 984 >seq117635 Length=2046 Score = 154 bits (170), Expect = 2e-35 Identities = 105/118 (89%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| ||||||| | ||||||||||| ||| || ||||||||||||||||||||||||| Sbjct 1588 GCTAGTTAGCAGACTGAGGTCTCGTTCATTAACGAAATTAACCAGACAAATCACTCCACC 1529 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||||||||||| ||||||||||||||||||| || ||||| |||| Sbjct 1528 AACTAAGAACGCTCATGCACCACCGCCCATAGAATCAAGAAAGATCTCTCAATGTGTC 1471 >seq147352 Length=942 Score = 116 bits (128), Expect = 6e-24 Identities = 81/90 (90%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGC--GCGTGCGGCCCAGAACATCTAAGGGCATCACA 59 ||||| || | | |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 347 ACTCGTTGAATACATCAGTGTAGCGCTCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 406 Query 60 GACCTGTTATTGCCTCAAACTTCCATTGGC 89 ||||||||||||||||||| |||| ||||| Sbjct 407 GACCTGTTATTGCCTCAAATTTCC-TTGGC 435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795172989180