Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06]
210,780 sequences; 203,686,407 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq46077 93.3 4e-17
seq124117 91.5 2e-16
>seq46077
Length=505
Score = 93.3 bits (102), Expect = 4e-17
Identities = 109/145 (75%), Gaps = 3/145 (2%)
Strand=Plus/Plus
Query 42 GCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTT 101
||||| ||||| | |||||| ||||||||||||||||||||| | |||||||||||
Sbjct 1 GCAGG--TTTGCCTGCATACATCTGCATGGAATAATAGAATAGGACTT-CGGTTCTATTT 57
Query 102 TGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCA 161
||| ||||| | ||| |||||||| ||| || || |||||| | |||||
Sbjct 58 TGTTGGTTTTCGGAACCAGAAGTAATGATGAATGGAGACAGGCGGGGGCATTCGTATTGC 117
Query 162 ATTGTCAAAGGTGAAATTCTTGGAT 186
|| | |||||||||||||||||
Sbjct 118 GACGTTAGAGGTGAAATTCTTGGAT 142
>seq124117
Length=1427
Score = 91.5 bits (100), Expect = 2e-16
Identities = 131/181 (72%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCAT 69
|| |||||||||| ||||||||| ||| |||||| || | ||| | |||||||| |||
Sbjct 808 CTATTACTTTGAAGAAATTAGAGTGTTTAAAGCAAGCTTACCCTCTAGATACATTAGCAT 867
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | | ||| | | |||| ||||| || || | | | || |||||||
Sbjct 868 GGGATAACATCAGAGG-CTTTCGGTCATATTTCGTTGGCCTTCGGAATCGGA-GTAATGA 925
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| |||| |||| | ||| | || |||| ||||||||||||| |||||
Sbjct 926 TTAACAGGGACAGTCAGGGGCATTCGTAGTTCATAGTCAGAGGTGAAATTCTTAAATTTA 985
Query 190 T 190
|
Sbjct 986 T 986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 510954531200
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |