Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq46077 93.3 4e-17 seq124117 91.5 2e-16 >seq46077 Length=505 Score = 93.3 bits (102), Expect = 4e-17 Identities = 109/145 (75%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 42 GCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTT 101 ||||| ||||| | |||||| ||||||||||||||||||||| | ||||||||||| Sbjct 1 GCAGG--TTTGCCTGCATACATCTGCATGGAATAATAGAATAGGACTT-CGGTTCTATTT 57 Query 102 TGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCA 161 ||| ||||| | ||| |||||||| ||| || || |||||| | ||||| Sbjct 58 TGTTGGTTTTCGGAACCAGAAGTAATGATGAATGGAGACAGGCGGGGGCATTCGTATTGC 117 Query 162 ATTGTCAAAGGTGAAATTCTTGGAT 186 || | ||||||||||||||||| Sbjct 118 GACGTTAGAGGTGAAATTCTTGGAT 142 >seq124117 Length=1427 Score = 91.5 bits (100), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCAT 69 || |||||||||| ||||||||| ||| |||||| || | ||| | |||||||| ||| Sbjct 808 CTATTACTTTGAAGAAATTAGAGTGTTTAAAGCAAGCTTACCCTCTAGATACATTAGCAT 867 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | ||| | | |||| ||||| || || | | | || ||||||| Sbjct 868 GGGATAACATCAGAGG-CTTTCGGTCATATTTCGTTGGCCTTCGGAATCGGA-GTAATGA 925 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| |||| |||| | ||| | || |||| ||||||||||||| ||||| Sbjct 926 TTAACAGGGACAGTCAGGGGCATTCGTAGTTCATAGTCAGAGGTGAAATTCTTAAATTTA 985 Query 190 T 190 | Sbjct 986 T 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510954531200