Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06]
210,780 sequences; 203,686,407 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq147352 260 3e-67
seq12796 201 2e-49
>seq147352
Length=942
Score = 260 bits (288), Expect = 3e-67
Identities = 196/228 (86%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG--C 160
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 430 GGAAATTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGAGC 371
Query 161 GCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220
|||||||||| | |||||||| || |||| |||| | | | |||||||||| |
Sbjct 370 GCTACACTGATGTATTCAACGAGTCTATAGCCTTAGCCGACATGCCCGGGTAATCTT-TG 312
Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280
||| | ||||| |||||||||| |||||||||| ||| ||||||||||||||| ||||
Sbjct 311 AAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTA 252
Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 251 GTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 204
>seq12796
Length=984
Score = 201 bits (222), Expect = 2e-49
Identities = 203/258 (79%), Gaps = 6/258 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||||| ||||| || | ||||| ||||||||||||||||
Sbjct 838 CTTCTTAGAGGGACAAACGGCTTTTAGCCGTACGA-GATTGAG-CAATAACAGGTCTGTG 781
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| ||||||||||||||||||||| || | | || || || | ||
Sbjct 780 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACAATGGAGGTGTCAGCGTGT-CTTCC 722
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
| |||||| ||| |||||| | | |||| | ||||||| ||||| | | |||
Sbjct 721 C--TGGCCGAGAGGCTCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGTGGCTTG 664
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||| || | | | |||||||||| || ||||| ||||||||| ||||||| ||||||
Sbjct 663 AAATTGTTCCACATGAACGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 604
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||||||||||||
Sbjct 603 ACGTCCCTGCCCTTTGTA 586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 945203491840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |