Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq147352 260 3e-67 seq12796 201 2e-49 >seq147352 Length=942 Score = 260 bits (288), Expect = 3e-67 Identities = 196/228 (86%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG--C 160 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 430 GGAAATTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGAGC 371 Query 161 GCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220 |||||||||| | |||||||| || |||| |||| | | | |||||||||| | Sbjct 370 GCTACACTGATGTATTCAACGAGTCTATAGCCTTAGCCGACATGCCCGGGTAATCTT-TG 312 Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 ||| | ||||| |||||||||| |||||||||| ||| ||||||||||||||| |||| Sbjct 311 AAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTA 252 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 251 GTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 204 >seq12796 Length=984 Score = 201 bits (222), Expect = 2e-49 Identities = 203/258 (79%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||||| ||||| || | ||||| |||||||||||||||| Sbjct 838 CTTCTTAGAGGGACAAACGGCTTTTAGCCGTACGA-GATTGAG-CAATAACAGGTCTGTG 781 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||| || | | || || || | || Sbjct 780 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACAATGGAGGTGTCAGCGTGT-CTTCC 722 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| ||| |||||| | | |||| | ||||||| ||||| | | ||| Sbjct 721 C--TGGCCGAGAGGCTCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGTGGCTTG 664 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| || | | | |||||||||| || ||||| ||||||||| ||||||| |||||| Sbjct 663 AAATTGTTCCACATGAACGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 604 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 603 ACGTCCCTGCCCTTTGTA 586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945203491840