Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06]
210,780 sequences; 203,686,407 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq118043 251 2e-64
seq150722 187 8e-45
seq121548 138 4e-30
>seq118043
Length=1029
Score = 251 bits (278), Expect = 2e-64
Identities = 147/152 (97%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TCATTAATCGATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 443
Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGACATTCA 383
Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||| ||
Sbjct 382 GAGCACTGGGCAGAAATCACATTGCGTCATCA 351
Score = 82.4 bits (90), Expect = 2e-13
Identities = 91/119 (76%), Gaps = 3/119 (3%)
Strand=Plus/Minus
Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCG 230
|||||| || || |||||| || ||| || | |||||||||||||||| || |||
Sbjct 617 TTCCGCCCAATCGAGTAAGTACAACAACAATGAAAGTAGTGGTATTTCACTGACGTGCCG 558
Query 231 AAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289
|||| ||||||||||| |||||||||||| ||| || || || | |||| |||||
Sbjct 557 AAACA-CTCCCACTTATGCTACACCTCTCATGTCGTTATACGTAGCCAAACTAAAGTCA 500
Score = 82.4 bits (90), Expect = 2e-13
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| | |||||| ||| |||||| ||| |||| ||||||||||| ||||||
Sbjct 906 CTTATACTCTACGCGAGGTTTCTGGCCTCACTGAGCTGGTCTTAGGACACCCACGTTATT 847
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||| | ||||| ||||||||| |||||||||| |||| | ||||| || | ||||||
Sbjct 846 CTTTGATGGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCTATGTCCTCGAAACGGATC 787
>seq150722
Length=996
Score = 187 bits (206), Expect = 8e-45
Identities = 130/148 (88%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447
|| ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 554 ATTCATTCATGCGCGTCACTGATTAGATGACGAGATATTTGAATACCTTAAGAGAGTCAT 495
Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507
| ||||||| | ||||||||||| |||||||||||| |||||||||||||||| ||||
Sbjct 494 AACTACTCCCTCTGTTTACCCGCGTTTGGTTGAATTTTTTCACTTTGACATTCATAGCAT 435
Query 508 TGGGCAGAAATCACATTGCGTCAACATC 535
|||| |||||||| ||||| | ||||||
Sbjct 434 TGGGTAGAAATCATATTGCATTAACATC 407
>seq121548
Length=2574
Score = 138 bits (152), Expect = 4e-30
Identities = 111/136 (82%), Gaps = 11/136 (8%)
Strand=Plus/Minus
Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA-------- 452
||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 868 CGTCACTAATTAGATTACGAGGCATTTGGCTACCTTAAGAGAGTCTTAATTAGTTAATTA 809
Query 453 ---CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509
||| | ||||||||||| |||||||||||||||||| |||||| |||||||||||
Sbjct 808 TTACTCTTGTTGTTTACCCGCGTTTGGTTGAATTTCTTCACGTTGACAATCAGAGCACTG 749
Query 510 GGCAGAAATCACATTG 525
| |||||| |||||
Sbjct 748 AGTAGAAATTTCATTG 733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1631753325440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |