Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq118043 251 2e-64 seq150722 187 8e-45 seq121548 138 4e-30 >seq118043 Length=1029 Score = 251 bits (278), Expect = 2e-64 Identities = 147/152 (97%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 502 TCATTAATCGATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 443 Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGACATTCA 383 Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||| || Sbjct 382 GAGCACTGGGCAGAAATCACATTGCGTCATCA 351 Score = 82.4 bits (90), Expect = 2e-13 Identities = 91/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCG 230 |||||| || || |||||| || ||| || | |||||||||||||||| || ||| Sbjct 617 TTCCGCCCAATCGAGTAAGTACAACAACAATGAAAGTAGTGGTATTTCACTGACGTGCCG 558 Query 231 AAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289 |||| ||||||||||| |||||||||||| ||| || || || | |||| ||||| Sbjct 557 AAACA-CTCCCACTTATGCTACACCTCTCATGTCGTTATACGTAGCCAAACTAAAGTCA 500 Score = 82.4 bits (90), Expect = 2e-13 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| | |||||| ||| |||||| ||| |||| ||||||||||| |||||| Sbjct 906 CTTATACTCTACGCGAGGTTTCTGGCCTCACTGAGCTGGTCTTAGGACACCCACGTTATT 847 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| | ||||| ||||||||| |||||||||| |||| | ||||| || | |||||| Sbjct 846 CTTTGATGGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCTATGTCCTCGAAACGGATC 787 >seq150722 Length=996 Score = 187 bits (206), Expect = 8e-45 Identities = 130/148 (88%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 || ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| Sbjct 554 ATTCATTCATGCGCGTCACTGATTAGATGACGAGATATTTGAATACCTTAAGAGAGTCAT 495 Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 | ||||||| | ||||||||||| |||||||||||| |||||||||||||||| |||| Sbjct 494 AACTACTCCCTCTGTTTACCCGCGTTTGGTTGAATTTTTTCACTTTGACATTCATAGCAT 435 Query 508 TGGGCAGAAATCACATTGCGTCAACATC 535 |||| |||||||| ||||| | |||||| Sbjct 434 TGGGTAGAAATCATATTGCATTAACATC 407 >seq121548 Length=2574 Score = 138 bits (152), Expect = 4e-30 Identities = 111/136 (82%), Gaps = 11/136 (8%) Strand=Plus/Minus Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA-------- 452 ||||||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 868 CGTCACTAATTAGATTACGAGGCATTTGGCTACCTTAAGAGAGTCTTAATTAGTTAATTA 809 Query 453 ---CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 ||| | ||||||||||| |||||||||||||||||| |||||| ||||||||||| Sbjct 808 TTACTCTTGTTGTTTACCCGCGTTTGGTTGAATTTCTTCACGTTGACAATCAGAGCACTG 749 Query 510 GGCAGAAATCACATTG 525 | |||||| ||||| Sbjct 748 AGTAGAAATTTCATTG 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1631753325440