Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06]
210,780 sequences; 203,686,407 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq117092 381 2e-103
seq164407 289 9e-76
seq199142 248 3e-63
seq207149 232 2e-58
seq121937 208 2e-51
seq201561 104 7e-20
seq198387 96.9 1e-17
seq5894 93.3 1e-16
>seq117092
Length=1163
Score = 381 bits (422), Expect = 2e-103
Identities = 400/518 (77%), Gaps = 21/518 (4%)
Strand=Plus/Plus
Query 6 CATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64
|||||| ||||| | || | | ||| || ||||| ||| | | ||||||||||||||
Sbjct 361 CATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATCTTTCGTCACTACCTCCCC 420
Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 GAGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTGTCTC 480
Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 481 AGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGTAGGCA 540
Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AA 243
| |||||||||||||||||||| |||||| ||||||| || | ||||||| | ||
Sbjct 541 TAGAACCTACCATCGAAAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGTACGAA 600
Query 244 GGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA-------GGAGCCCCGAA--GG 292
| || |||||| || | |||||||| || ||||||| || | || ||
Sbjct 601 GACCGTGCGATCCGCTCAAAGTTATTCAGAGTCACCAAAATTCACGGTGGCCGAAACCAA 660
Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC----GAAGTCGGGGTT--TTTAGCA 346
|| | | |||| |||||||||| | |||||| ||| | | || |||
Sbjct 661 CCGATCGGTTTTGATCTAATAAAAGCGTTCCTTCCATCTCTGGTCAGAACTCCGTTGGCA 720
Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGAT 406
||||||||||| || || || | |||||||| ||| ||||| ||| | | ||| ||
Sbjct 721 TGTATTAGCTCCAGTTTTTCCGCAGTTATCCAAGTAACTGGGTACAATCTATTGAACCAT 780
Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466
||||||| ||||||||| | ||| ||||||| || | | |||| ||||| |||||||
Sbjct 781 AACTGATATAATGAGCCTTCCGCGGTTTCACCTTA-ATTTGGCTTGCACTTACACATGCA 839
Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||| ||||||||| | ||||||||
Sbjct 840 TGGCTTAATCTTTGAGAGAAGCATATGTC-ACTGGCAG 876
>seq164407
Length=3892
Score = 289 bits (320), Expect = 9e-76
Identities = 198/222 (89%), Gaps = 1/222 (0%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62
||||||||||||||| |||| |||| |||||| ||| |||||||| |||||| ||||
Sbjct 3672 ACTCATTCCAATTACCAGACTCAAA-GAGCCCGATATTGTTATTTATTATCACTATCTCC 3730
Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122
||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 3731 CCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTACCTTCCTTGGATGTGGTAGTCGTTTC 3790
Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182
||| |||||||||||| ||||||||| |||||| |||| ||| || |||||||||||
Sbjct 3791 TCAAGCTCCCTCTCCGTAATCGAACCTTAATTCTCCGTCACCTGTCACCACCATGGTAGG 3850
Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224
|||||||||||||||||||||||||||||||||| |||||||
Sbjct 3851 CCACTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAA 3892
>seq199142
Length=686
Score = 248 bits (274), Expect = 3e-63
Identities = 185/213 (87%), Gaps = 3/213 (1%)
Strand=Plus/Plus
Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352
||||| ||||||||||||||| || ||||||| |||||||| ||| | ||| || ||
Sbjct 33 CGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGAATTTGTTGCACGTGTT 92
Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412
|||||||||||||| ||||||||||| |||||| | ||| |||||| |||| ||||||||
Sbjct 93 AGCTCTAGAATTACTACGGTTATCCAAGTAGTA-GATACCATCAAACAAACTATAACTGA 151
Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCT 471
||||||||||||||||||||||||| || | ||| || ||||||| ||||||||| ||
Sbjct 152 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGACT 211
Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||
Sbjct 212 TAATCTTTGAGACAAGCATATGACTACTGGCAG 244
>seq207149
Length=1628
Score = 232 bits (256), Expect = 2e-58
Identities = 247/319 (77%), Gaps = 9/319 (3%)
Strand=Plus/Minus
Query 153 TTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG 212
||| | || ||| ||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 494 TTCTCTGTCACCTGTTACCATCATGGTAGGCCGTTATCCTACCATCGAAAGTTGATAGGG 435
Query 213 CAGAAATTTGAATGAACCATCGCCGGC-TCAAGGCCATGCGATTCGTTAAGTTATTATGA 271
|| | |||||||||| | ||| | || | ||||| |||||| ||| |||||| ||||
Sbjct 434 CAAATATTTGAATGATGCGTCGTCAGCATAAAGGCTGTGCGATCCGTCGAGTTATCATGA 375
Query 272 ATCACCAAGGAGCCCCGAAGGG----CGTTGGTTTTTTATCTAATAAATACACCCCTTCC 327
|||| ||| | | | || | ||||| |||||||||||||||| || |||||||
Sbjct 374 ATCATCAAAGCGATGGGCAGAGGCTACGTTGACTTTTTATCTAATAAATGCATCCCTTCC 315
Query 328 -GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA 386
|||||||| ||| | ||| ||||||| ||||||||||| | |||||||| ||| | |
Sbjct 314 AAAAGTCGGGATTTGTTGCACGTATTAGATCTAGAATTACTATGGTTATCCGAGTA-TTA 256
Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446
| || || ||| |||| |||| ||| |||||||| |||| |||||||||| |||| ||
Sbjct 255 GATAACATTAAACAAACTATAAGTGA-TTAATGAGTCATTTGCAGTTTCACGGTATGAAT 197
Query 447 T-GCTTATACTTAGACATG 464
| | | ||||||||| |||
Sbjct 196 TAGTTCATACTTAGAGATG 178
>seq121937
Length=771
Score = 208 bits (230), Expect = 2e-51
Identities = 366/519 (71%), Gaps = 33/519 (6%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||| |||||| |||||| | || | |||||| ||| || |||||||||| || |
Sbjct 649 GTATTCATTCTAATTACCAAACTGCTA-GAGCCCGATATTGTTACTTATTGTCACCACAT 591
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||| |||||| |||| | | ||| || || ||| || |||||| ||||||||
Sbjct 590 CCCCGTGTTAGGATTGA-TAATGTTCACGCATGTTGTTTTCGTTAGATGTGCTAGCCGTT 532
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCG----TTGATACCAT 176
||| | ||| | ||| |||||||||||| | || || || ||| ||||
Sbjct 531 TCTTAAGCTTTTTT-----AATTGAACCCTAATTCGCAGTCACTCGCCACTTGTCACCAC 477
Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236
|||||| ||||| ||||| ||||||||||| |||| | ||| |||| | |||
Sbjct 476 CA-AGGCCATTATCCCACCATTGAAAGTTGATAAGGCATGTACTTGGATGATGTGTTGCC 418
Query 237 GGCTCAAGGCC-ATGCGATTCGTTAAGTTATTATGAATCAC-----CAAGGAGCCCCGAA 290
| || | | |||| |||| | || | | |||||||| ||| |||| |
Sbjct 417 AACAAAAAGACTATGCTATTCATCGAGCTTTCATGAATCATGAATACAATGAGCAGAGTC 358
Query 291 GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGT-CGGGGTTTTTAGCATGT 349
| |||||| ||||| ||||||| | || |||||| ||| || |||| ||||
Sbjct 357 CG-CGTTGGCCTTTTACCTAATAA-TGCATACCTTCCAGAGTTCGATGTTTG----ATGT 304
Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA-- 407
||||| | | |||||| ||||||||| ||||| | ||| | ||| ||| ||
Sbjct 303 ATTAGTTTCAAAATTACTACGGTTATCTGAGTAGTG-GATACCAATAAAAAAAAATTATG 245
Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGT--ATAGATTGCTTATACTTAGACATGC 465
| ||||||||||| |||||| ||||||| | | ||| ||| ||||||| | ||||
Sbjct 244 AAAGATTTAATGAGTCATTCGTAGTTTCAGTCTTAATAAATTC---ATACTTACATATGC 188
Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||| ||||||||||||||||||||||
Sbjct 187 ATGGCTTAATCTTTGTAACAAGCATATGACTACTGGCAG 149
>seq201561
Length=1339
Score = 104 bits (114), Expect = 7e-20
Identities = 250/373 (67%), Gaps = 28/373 (8%)
Strand=Plus/Minus
Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
||||||||| | ||| ||| ||| | | |||| ||||| ||||||| ||
Sbjct 934 TACTCATTCGAGATACCTGACTCAACA-----CGGTATTGTTATTTTTTGTCACA---TC 883
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|| |||| ||||||||||||| |||| | || ||| || |||| ||||
Sbjct 882 CCTGTGTTACGATTGGGTAATTTA-GCGCAAGTTGAATTCATTTGATGCAATAGC----- 829
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
| |||| ||| | ||| ||||||||||| || | |||| | ||||| |
Sbjct 828 ---AAGCTCAATCTTCATAATTGAACCCTAATTATCCATCACCCTACACCATCATGGCAA 772
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
||||||||| ||||||||||||||| || || | || |||||||| | | || | |
Sbjct 771 AACACTATCCTTCCATCGAAAGTTGATTGGACATATATATGAATGAAGCGT-ACCAACAC 713
Query 242 -AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGG------C 294
|||| |||||| || ||||||||||| |||| ||| | || |
Sbjct 712 GAAGGTTGTGCGATCTGTCAAGTTATTATGGATCATCAA--TACAATAAATAGAATCCTA 655
Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTC-CGAAGTCGGGGTTTTTAGCATGTATTA 353
|||| |||||| | ||||||||| |||||| ||| || || ||| ||| |||| |
Sbjct 654 GTTGACATTTTATTTGATAAATACATCCCTTCAAGAAATCAGGTTTTGATGCACGTATCA 595
Query 354 GCTCTAGAATTAC 366
||||||||||||
Sbjct 594 ACTCTAGAATTAC 582
>seq198387
Length=886
Score = 96.9 bits (106), Expect = 1e-17
Identities = 168/240 (70%), Gaps = 16/240 (7%)
Strand=Plus/Minus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCT--T 100
||||| ||||||| |||| |||| ||||||||||||| |||| |||| | |
Sbjct 444 TATTTTTTGTCACA---TCCCTGTGTTACGATTGGGTAATTTA-GCGCAAGCTGAATATT 389
Query 101 CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGT 160
| || |||| || | | |||| ||| | ||| ||||||||||| || |
Sbjct 388 CATTAGATGCAATAAC--------AAGCTCAATCTTCATAATTGAACCCTAATTATCCAT 337
Query 161 TACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATT 220
|||| | ||||| | ||||||||| ||||||||||||||| ||||| | ||
Sbjct 336 CACCCTACACCATCATGGCAAAACACTATCCTTCCATCGAAAGTTGATTGGGCATATATA 277
Query 221 TGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA 279
|||||||| ||| || | | |||| |||||| ||| ||||||||||| |||| |||
Sbjct 276 TGAATGAAGCAT-ACCAACACGAAGGTTGTGCGATCCGTCAAGTTATTATGGATCATCAA 218
>seq5894
Length=1365
Score = 93.3 bits (102), Expect = 1e-16
Identities = 71/84 (85%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 153 TTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG 212
||| |||| |||| | | |||||||||||| ||||||||||||||||||||||||||
Sbjct 987 TTCTCCGTCACCCATCACCATCATGGTAGGCCATTATCCTACCATCGAAAGTTGATAGGG 1046
Query 213 CAGAAATTTGAATGAACCATCGCC 236
|||| |||||||||| | |||||
Sbjct 1047 CAGATATTTGAATGACACTTCGCC 1070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1507216378880
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