Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nubicola_20[genbank_20GCA_5F000511995.1_202013-12-06] 210,780 sequences; 203,686,407 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq117092 381 2e-103 seq164407 289 9e-76 seq199142 248 3e-63 seq207149 232 2e-58 seq121937 208 2e-51 seq201561 104 7e-20 seq198387 96.9 1e-17 seq5894 93.3 1e-16 >seq117092 Length=1163 Score = 381 bits (422), Expect = 2e-103 Identities = 400/518 (77%), Gaps = 21/518 (4%) Strand=Plus/Plus Query 6 CATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 |||||| ||||| | || | | ||| || ||||| ||| | | |||||||||||||| Sbjct 361 CATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATCTTTCGTCACTACCTCCCC 420 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 421 GAGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTGTCTC 480 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 481 AGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGTAGGCA 540 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AA 243 | |||||||||||||||||||| |||||| ||||||| || | ||||||| | || Sbjct 541 TAGAACCTACCATCGAAAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGTACGAA 600 Query 244 GGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA-------GGAGCCCCGAA--GG 292 | || |||||| || | |||||||| || ||||||| || | || || Sbjct 601 GACCGTGCGATCCGCTCAAAGTTATTCAGAGTCACCAAAATTCACGGTGGCCGAAACCAA 660 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC----GAAGTCGGGGTT--TTTAGCA 346 || | | |||| |||||||||| | |||||| ||| | | || ||| Sbjct 661 CCGATCGGTTTTGATCTAATAAAAGCGTTCCTTCCATCTCTGGTCAGAACTCCGTTGGCA 720 Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGAT 406 ||||||||||| || || || | |||||||| ||| ||||| ||| | | ||| || Sbjct 721 TGTATTAGCTCCAGTTTTTCCGCAGTTATCCAAGTAACTGGGTACAATCTATTGAACCAT 780 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 ||||||| ||||||||| | ||| ||||||| || | | |||| ||||| ||||||| Sbjct 781 AACTGATATAATGAGCCTTCCGCGGTTTCACCTTA-ATTTGGCTTGCACTTACACATGCA 839 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||| ||||||||| | |||||||| Sbjct 840 TGGCTTAATCTTTGAGAGAAGCATATGTC-ACTGGCAG 876 >seq164407 Length=3892 Score = 289 bits (320), Expect = 9e-76 Identities = 198/222 (89%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| |||| |||| |||||| ||| |||||||| |||||| |||| Sbjct 3672 ACTCATTCCAATTACCAGACTCAAA-GAGCCCGATATTGTTATTTATTATCACTATCTCC 3730 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 3731 CCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTACCTTCCTTGGATGTGGTAGTCGTTTC 3790 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||| |||||||||||| ||||||||| |||||| |||| ||| || ||||||||||| Sbjct 3791 TCAAGCTCCCTCTCCGTAATCGAACCTTAATTCTCCGTCACCTGTCACCACCATGGTAGG 3850 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 3851 CCACTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAA 3892 >seq199142 Length=686 Score = 248 bits (274), Expect = 3e-63 Identities = 185/213 (87%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||||| ||||||||||||||| || ||||||| |||||||| ||| | ||| || || Sbjct 33 CGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGAATTTGTTGCACGTGTT 92 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| ||||||||||| |||||| | ||| |||||| |||| |||||||| Sbjct 93 AGCTCTAGAATTACTACGGTTATCCAAGTAGTA-GATACCATCAAACAAACTATAACTGA 151 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| || ||||||| ||||||||| || Sbjct 152 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGACT 211 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 212 TAATCTTTGAGACAAGCATATGACTACTGGCAG 244 >seq207149 Length=1628 Score = 232 bits (256), Expect = 2e-58 Identities = 247/319 (77%), Gaps = 9/319 (3%) Strand=Plus/Minus Query 153 TTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG 212 ||| | || ||| ||| | ||||||||||| |||||||||||||||||||||||||| Sbjct 494 TTCTCTGTCACCTGTTACCATCATGGTAGGCCGTTATCCTACCATCGAAAGTTGATAGGG 435 Query 213 CAGAAATTTGAATGAACCATCGCCGGC-TCAAGGCCATGCGATTCGTTAAGTTATTATGA 271 || | |||||||||| | ||| | || | ||||| |||||| ||| |||||| |||| Sbjct 434 CAAATATTTGAATGATGCGTCGTCAGCATAAAGGCTGTGCGATCCGTCGAGTTATCATGA 375 Query 272 ATCACCAAGGAGCCCCGAAGGG----CGTTGGTTTTTTATCTAATAAATACACCCCTTCC 327 |||| ||| | | | || | ||||| |||||||||||||||| || ||||||| Sbjct 374 ATCATCAAAGCGATGGGCAGAGGCTACGTTGACTTTTTATCTAATAAATGCATCCCTTCC 315 Query 328 -GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA 386 |||||||| ||| | ||| ||||||| ||||||||||| | |||||||| ||| | | Sbjct 314 AAAAGTCGGGATTTGTTGCACGTATTAGATCTAGAATTACTATGGTTATCCGAGTA-TTA 256 Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446 | || || ||| |||| |||| ||| |||||||| |||| |||||||||| |||| || Sbjct 255 GATAACATTAAACAAACTATAAGTGA-TTAATGAGTCATTTGCAGTTTCACGGTATGAAT 197 Query 447 T-GCTTATACTTAGACATG 464 | | | ||||||||| ||| Sbjct 196 TAGTTCATACTTAGAGATG 178 >seq121937 Length=771 Score = 208 bits (230), Expect = 2e-51 Identities = 366/519 (71%), Gaps = 33/519 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||| |||||| |||||| | || | |||||| ||| || |||||||||| || | Sbjct 649 GTATTCATTCTAATTACCAAACTGCTA-GAGCCCGATATTGTTACTTATTGTCACCACAT 591 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| |||||| |||| | | ||| || || ||| || |||||| |||||||| Sbjct 590 CCCCGTGTTAGGATTGA-TAATGTTCACGCATGTTGTTTTCGTTAGATGTGCTAGCCGTT 532 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCG----TTGATACCAT 176 ||| | ||| | ||| |||||||||||| | || || || ||| |||| Sbjct 531 TCTTAAGCTTTTTT-----AATTGAACCCTAATTCGCAGTCACTCGCCACTTGTCACCAC 477 Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 |||||| ||||| ||||| ||||||||||| |||| | ||| |||| | ||| Sbjct 476 CA-AGGCCATTATCCCACCATTGAAAGTTGATAAGGCATGTACTTGGATGATGTGTTGCC 418 Query 237 GGCTCAAGGCC-ATGCGATTCGTTAAGTTATTATGAATCAC-----CAAGGAGCCCCGAA 290 | || | | |||| |||| | || | | |||||||| ||| |||| | Sbjct 417 AACAAAAAGACTATGCTATTCATCGAGCTTTCATGAATCATGAATACAATGAGCAGAGTC 358 Query 291 GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGT-CGGGGTTTTTAGCATGT 349 | |||||| ||||| ||||||| | || |||||| ||| || |||| |||| Sbjct 357 CG-CGTTGGCCTTTTACCTAATAA-TGCATACCTTCCAGAGTTCGATGTTTG----ATGT 304 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA-- 407 ||||| | | |||||| ||||||||| ||||| | ||| | ||| ||| || Sbjct 303 ATTAGTTTCAAAATTACTACGGTTATCTGAGTAGTG-GATACCAATAAAAAAAAATTATG 245 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGT--ATAGATTGCTTATACTTAGACATGC 465 | ||||||||||| |||||| ||||||| | | ||| ||| ||||||| | |||| Sbjct 244 AAAGATTTAATGAGTCATTCGTAGTTTCAGTCTTAATAAATTC---ATACTTACATATGC 188 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| |||||||||||||||||||||| Sbjct 187 ATGGCTTAATCTTTGTAACAAGCATATGACTACTGGCAG 149 >seq201561 Length=1339 Score = 104 bits (114), Expect = 7e-20 Identities = 250/373 (67%), Gaps = 28/373 (8%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||||| | ||| ||| ||| | | |||| ||||| ||||||| || Sbjct 934 TACTCATTCGAGATACCTGACTCAACA-----CGGTATTGTTATTTTTTGTCACA---TC 883 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || |||| ||||||||||||| |||| | || ||| || |||| |||| Sbjct 882 CCTGTGTTACGATTGGGTAATTTA-GCGCAAGTTGAATTCATTTGATGCAATAGC----- 829 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 | |||| ||| | ||| ||||||||||| || | |||| | ||||| | Sbjct 828 ---AAGCTCAATCTTCATAATTGAACCCTAATTATCCATCACCCTACACCATCATGGCAA 772 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 ||||||||| ||||||||||||||| || || | || |||||||| | | || | | Sbjct 771 AACACTATCCTTCCATCGAAAGTTGATTGGACATATATATGAATGAAGCGT-ACCAACAC 713 Query 242 -AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGG------C 294 |||| |||||| || ||||||||||| |||| ||| | || | Sbjct 712 GAAGGTTGTGCGATCTGTCAAGTTATTATGGATCATCAA--TACAATAAATAGAATCCTA 655 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTC-CGAAGTCGGGGTTTTTAGCATGTATTA 353 |||| |||||| | ||||||||| |||||| ||| || || ||| ||| |||| | Sbjct 654 GTTGACATTTTATTTGATAAATACATCCCTTCAAGAAATCAGGTTTTGATGCACGTATCA 595 Query 354 GCTCTAGAATTAC 366 |||||||||||| Sbjct 594 ACTCTAGAATTAC 582 >seq198387 Length=886 Score = 96.9 bits (106), Expect = 1e-17 Identities = 168/240 (70%), Gaps = 16/240 (7%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCT--T 100 ||||| ||||||| |||| |||| ||||||||||||| |||| |||| | | Sbjct 444 TATTTTTTGTCACA---TCCCTGTGTTACGATTGGGTAATTTA-GCGCAAGCTGAATATT 389 Query 101 CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGT 160 | || |||| || | | |||| ||| | ||| ||||||||||| || | Sbjct 388 CATTAGATGCAATAAC--------AAGCTCAATCTTCATAATTGAACCCTAATTATCCAT 337 Query 161 TACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATT 220 |||| | ||||| | ||||||||| ||||||||||||||| ||||| | || Sbjct 336 CACCCTACACCATCATGGCAAAACACTATCCTTCCATCGAAAGTTGATTGGGCATATATA 277 Query 221 TGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA 279 |||||||| ||| || | | |||| |||||| ||| ||||||||||| |||| ||| Sbjct 276 TGAATGAAGCAT-ACCAACACGAAGGTTGTGCGATCCGTCAAGTTATTATGGATCATCAA 218 >seq5894 Length=1365 Score = 93.3 bits (102), Expect = 1e-16 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 153 TTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG 212 ||| |||| |||| | | |||||||||||| |||||||||||||||||||||||||| Sbjct 987 TTCTCCGTCACCCATCACCATCATGGTAGGCCATTATCCTACCATCGAAAGTTGATAGGG 1046 Query 213 CAGAAATTTGAATGAACCATCGCC 236 |||| |||||||||| | ||||| Sbjct 1047 CAGATATTTGAATGACACTTCGCC 1070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507216378880