Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq188451 179 6e-43 seq73737 176 7e-42 seq141771 116 6e-24 >seq188451 Length=315 Score = 179 bits (198), Expect = 6e-43 Identities = 134/156 (86%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTC 132 || |||||||||| |||||||||| ||||| | ||| | |||||||||| |||| || Sbjct 315 AATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATTACCCAAACCTTTC 256 Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192 ||| |||| || |||||||| | |||||||||||||||||||||||||||||||| Sbjct 255 GGCTAAGGAAATGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 196 Query 193 AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||| Sbjct 195 AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 160 >seq73737 Length=4372 Score = 176 bits (194), Expect = 7e-42 Identities = 177/224 (79%), Gaps = 12/224 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||| |||||| | Sbjct 3591 GTACAAAGGGCAGGGACGTAATCAACGCAAGCTA-ATGACTCACGCTTACTGGGAATT-C 3648 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAA-G 116 |||||| | | ||| |||| ||||| | ||||||||||||| ||| ||||| | Sbjct 3649 CTCGTTCATGGGCAATAATTACAATGCCCAATCCCCATCACGA---AATGGGTTCAAGCG 3705 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACT---CGTTGAATACATCAGTGTAGCGCG 173 |||||| ||| |||| ||| | || | || ||| || |||||||||| || Sbjct 3706 GTTACCCACTCCTTTCGGAGCAGGAAACAGTATGCACGATGACCACTTCAGTGTAGCACG 3765 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||| | ||||||||||||||||||||||||||||||| Sbjct 3766 CGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 3809 >seq141771 Length=528 Score = 116 bits (128), Expect = 6e-24 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 524 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAATTTCC 465 Query 229 GTGGCCTAAAAGGCCAT 245 |||||||| ||||| Sbjct 464 TTGGCCTAAGCTGCCAT 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 749645757545