Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2620 134 8e-30 seq24886 116 2e-24 seq226443 96.9 2e-18 seq73737 75.2 6e-12 >seq2620 Length=335 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || ||||||| || Sbjct 206 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCC 147 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 146 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 90 >seq24886 Length=1021 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||||||| || ||||| || ||||||| || Sbjct 1002 GAACCCAAAAACTTTGATTTCTCATAAGGTGTCGGCGGAGTCCTAAAAGTAACATCTGCC 943 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | |||||||| ||||| ||||||||||| ||| ||||| ||||||||||| Sbjct 942 GATCCTTGGTCGGCATCGTTTATGGTTAAGACTAGGACAATATCTAATCGTCTTCGA 886 >seq226443 Length=363 Score = 96.9 bits (106), Expect = 2e-18 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATCCCTAGTCGGCATCGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 56 >seq73737 Length=4372 Score = 75.2 bits (82), Expect = 6e-12 Identities = 90/120 (75%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGA-TAACATCG 57 ||||||||| |||||| |||| || ||| | || ||||||| |||| | | || | Sbjct 4236 GAACCCAAAAACTTTGGTTTCCCGGAAGCTTCCATTCGAGTCATGAAATTAGTTACTCAG 4295 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 4296 AATGATCGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 4355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 277556544570