Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq226443 150 2e-34 seq24886 78.8 1e-12 seq183000 77.0 4e-12 >seq226443 Length=363 Score = 150 bits (166), Expect = 2e-34 Identities = 114/133 (86%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 200 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTTATTATTCCATGCTAATGTATTCG 259 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 260 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 319 Query 126 C-ACCAATGAAGG 137 | ||| |||||| Sbjct 320 CGCCCAGTGAAGG 332 >seq24886 Length=1021 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 735 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 677 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 || |||||||| ||||||||||| |||| |||| Sbjct 676 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAA 642 >seq183000 Length=309 Score = 77.0 bits (84), Expect = 4e-12 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 34 TCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAGCCTGCTTTGAACACTCTAA 92 |||||| |||||| |||||||||||||| | | ||||| || |||||||| |||||||| Sbjct 85 TCCTATGATATTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAGCACTCTAA 26 Query 93 TTTTCTCAAGGTAAAAG 109 ||| |||| |||| || Sbjct 25 TTTCTTCAAAGTAACAG 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593336642142