Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq188451 405 1e-110 seq73737 187 5e-45 seq141771 104 4e-20 >seq188451 Length=315 Score = 405 bits (448), Expect = 1e-110 Identities = 233/239 (97%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 GAACGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 136 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 196 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 197 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATTTCCTTAGCCG 256 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 257 AAAGGTTTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 315 >seq73737 Length=4372 Score = 187 bits (206), Expect = 5e-45 Identities = 199/261 (76%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTGTG 130 |||||||||||||| | |||| | || | | | | || ||||||||||||||||| Sbjct 3852 CTTCTTAGAGGGACAAGCGGCGCTCGCAGCCGCACGAAACAGAGCAATAACAGGTCTGTG 3793 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA--- 187 |||||||||||||| | |||||||||||| |||||||||| | || || | | Sbjct 3792 ATGCCCTTAGATGTCCGGGGCCGCACGCGTGCTACACTGAAGTGGTCATCGTGCATACTG 3733 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 | ||| ||| |||| ||||||| | | || | | ||||| ||||||| | ||| Sbjct 3732 TTTCCTGCTCCGAAAGGAGTGGGTAACCGCTTGAACCCATTTCGTGATGGGGATTGGGCA 3673 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| ||||||||| | | |||||||||| || |||||||| | ||||| ||| |||||| Sbjct 3672 TTGTAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGCTTGCGTTG 3613 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 3612 ATTACGTCCCTGCCCTTTGTA 3592 >seq141771 Length=528 Score = 104 bits (114), Expect = 4e-20 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 GGAAATTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944139000064