Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq152914 495 1e-137 seq53744 141 3e-31 seq169933 116 1e-23 >seq152914 Length=961 Score = 495 bits (548), Expect = 1e-137 Identities = 288/297 (97%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||||| Sbjct 160 GGCTCCCACTTATGCTACACCTCTCATGTCTCTTCACAAAGTCAGACTAGAGTCAAGCTC 219 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 220 AACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 279 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 280 AGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 339 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 399 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 400 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAA 456 >seq53744 Length=565 Score = 141 bits (156), Expect = 3e-31 Identities = 117/145 (81%), Gaps = 11/145 (8%) Strand=Plus/Plus Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA--------- 452 || ||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 1 GTTACTAATTAGATTACGAGGCATTTGGCTACCTTAAGAGAGTCTTAATTAGTTAATTAT 60 Query 453 --CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGG 510 |||| | ||||| ||||| |||||||||||||||||| |||||| |||||||||||| Sbjct 61 TACTCCTGTTGTTTATCCGCGTTTGGTTGAATTTCTTCACGTTGACAATCAGAGCACTGG 120 Query 511 GCAGAAATCACATTGCGTCAACATC 535 | |||||| |||||| | ||||| Sbjct 121 GTAGAAATTTCATTGCATTGACATC 145 >seq169933 Length=1127 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 343 CTTTTGCTCTACGCGAGGTTTCTGTCCTCACTGAGCTGGCCTTAGGACACCTGCGTTACC 284 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||||||| ||||||||| |||||||||| |||||||||||| Sbjct 283 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTC 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1629915638624