Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq861 401 9e-110 seq2769 399 3e-109 seq2848 396 4e-108 seq2770 396 4e-108 seq845 392 5e-107 seq6 379 3e-103 seq709 360 3e-97 seq872 358 1e-96 seq533 331 1e-88 seq906 120 5e-25 >seq861 Length=1164 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 846 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 903 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 904 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 963 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 964 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 1023 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1024 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 1083 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 1084 GCCATAGTCCCTCTAA 1099 >seq2769 Length=1159 Score = 399 bits (442), Expect = 3e-109 Identities = 237/245 (97%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 916 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 973 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 974 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 1033 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1034 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 1093 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1094 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 1153 Query 241 GCCAT 245 ||||| Sbjct 1154 GCCAT 1158 >seq2848 Length=1018 Score = 396 bits (438), Expect = 4e-108 Identities = 245/257 (95%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 399 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 456 Query 61 CTCGTTGAAGACCAACAATT-GCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 119 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 457 CTCGTTGAAGACCAACAATTAGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 516 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 517 ACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 576 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 577 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGC 636 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 637 GGCCATAGTCCCTCTAA 653 >seq2770 Length=1380 Score = 396 bits (438), Expect = 4e-108 Identities = 245/257 (95%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 72 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAA-TTC 129 Query 61 CTCGTTG-AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 119 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 CTCGTTGAAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 189 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 190 ACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 249 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 250 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGC 309 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 310 GGCCATAGTCCCTCTAA 326 >seq845 Length=1027 Score = 392 bits (434), Expect = 5e-107 Identities = 244/257 (95%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 302 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 359 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 419 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 420 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 479 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | Sbjct 480 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC-AACTTCCTTGGCCTAAGCG 538 Query 241 GCCAT--CTCCCTCGAA 255 ||||| |||||| || Sbjct 539 GCCATACGTCCCTCTAA 555 >seq6 Length=38222195 Score = 379 bits (420), Expect = 3e-103 Identities = 228/237 (96%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 32787858 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 32787915 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 32787916 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCTATCACGATGAAATTTCAAAGATTA 32787975 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 32787976 CCCGGGTCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 32788035 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 32788036 CCCAGAACATCTAAGAGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAA 32788092 Score = 356 bits (394), Expect = 3e-96 Identities = 230/247 (93%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 32773219 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCACGCTTACTAGGAATTTC 32773277 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32773278 TT-GTTGAAAACTAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 32773336 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTA--GCGCGCGTGC 178 ||||| | |||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 32773337 CCCGGGCATGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGCGTGC 32773396 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 || |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 32773397 GG-CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAATTTCCTTGGCCTAAG 32773455 Query 239 AGGCCAT 245 |||||| Sbjct 32773456 CGGCCAT 32773462 >seq709 Length=1232 Score = 360 bits (398), Expect = 3e-97 Identities = 211/216 (98%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 214 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 157 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 156 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 97 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 96 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 37 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 |||||||||||||||||||||||||||||||||||| Sbjct 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 1 >seq872 Length=1054 Score = 358 bits (396), Expect = 1e-96 Identities = 210/215 (98%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 842 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 899 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 959 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 960 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 1019 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215 ||||||||||||||||||||||||||||||||||| Sbjct 1020 CCCAGAACATCTAAGGGCATCACAGACCTGTTATT 1054 >seq533 Length=1011 Score = 331 bits (366), Expect = 1e-88 Identities = 204/213 (96%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 211 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 154 Query 61 CTCGTTG--AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGAT 118 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 153 CTCGTTTGAAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGAT 94 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG- 177 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 93 TACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGT 34 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTG 210 ||||||||||||||||||||||||||||||||| Sbjct 33 CGGCCCAGAACATCTAAGGGCATCACAGACCTG 1 >seq906 Length=1107 Score = 120 bits (132), Expect = 5e-25 Identities = 77/83 (93%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGC 60 Query 234 CTAAAAGGCCAT-CTCCCTCGAA 255 |||| |||||| |||||| || Sbjct 61 CTAAGCGGCCATAGTCCCTCTAA 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751977795320