Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2770 138 6e-31 seq845 132 3e-29 seq6 132 3e-29 seq906 131 9e-29 seq877 122 5e-26 seq2848 89.7 3e-16 >seq2770 Length=1380 Score = 138 bits (152), Expect = 6e-31 Identities = 103/118 (87%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||||||||||||||||| ||||||||| ||| ||||| || ||||||| | Sbjct 604 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 662 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 663 CGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 720 >seq845 Length=1027 Score = 132 bits (146), Expect = 3e-29 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| ||||||||||||| |||||||||| ||||| || ||||||| ||| Sbjct 832 AACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCCG 891 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 892 ATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 947 >seq6 Length=38222195 Score = 132 bits (146), Expect = 3e-29 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || ||||||| || Sbjct 32788388 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCAGAGTCCTAAAAGTAACATCCGCC 32788447 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 ||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||| Sbjct 32788448 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCG 32788503 Score = 129 bits (142), Expect = 3e-28 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| ||||||||||||| |||||||||| ||||| || ||||||| ||| Sbjct 32774338 AACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCTGCCG 32774397 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||||| |||||||| ||||| |||| |||||| |||||||||||||||||||| Sbjct 32774398 ATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTC 32774451 >seq906 Length=1107 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || ||||||| || Sbjct 359 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCC 418 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| ||| |||||||||||||||||| Sbjct 419 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACAGTATCTGATCGTCTTCGA 475 >seq877 Length=1140 Score = 122 bits (134), Expect = 5e-26 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 8 AAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCT 67 || ||||||||||||| |||||||||| ||||| || ||||||| ||||||||| Sbjct 1140 AAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCCGATCCCT 1081 Query 68 AGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 1080 GGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1031 >seq2848 Length=1018 Score = 89.7 bits (98), Expect = 3e-16 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || ||||||| || Sbjct 930 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCC 989 Query 61 GATCCCTAGTCGGCATAGTTTACGGTT 87 ||||||| |||||||| ||||| |||| Sbjct 990 GATCCCTGGTCGGCATCGTTTATGGTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278392044720