Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2770 300 3e-79 seq2848 298 9e-79 seq845 284 2e-74 seq6 280 2e-73 seq906 271 1e-70 seq861 161 2e-37 seq2 149 1e-33 seq2769 129 9e-28 seq709 104 4e-20 seq872 102 1e-19 seq533 87.8 3e-15 >seq2770 Length=1380 Score = 300 bits (332), Expect = 3e-79 Identities = 226/261 (87%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 217 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 276 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 277 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 334 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| | ||||||||||||||| ||||| Sbjct 335 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 394 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 454 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 455 AGAAAGAGCTCTCAGTCTGTC 475 >seq2848 Length=1018 Score = 298 bits (330), Expect = 9e-79 Identities = 224/260 (86%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 603 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 604 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 661 Query 120 CCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || | | | | || |||| |||||||| | ||||||||||||||| |||||| Sbjct 662 CCGCGGAGGAGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 721 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 781 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 782 GAAAGAGCTCTCAGTCTGTC 801 >seq845 Length=1027 Score = 284 bits (314), Expect = 2e-74 Identities = 223/261 (85%), Gaps = 7/261 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 446 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 505 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATA-GTCCCTCTAAGAAGCCA 118 |||||||||||||||| ||||| | | || |||| | ||| ||||||||||||||| Sbjct 506 CCTGTTATTGCCTCAA-CTTCCTTGGCCT--AAGCGGCCATACGTCCCTCTAAGAAGCTG 562 Query 119 GCCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 ||| | | | | || |||| |||||||| | ||||||||||||||| ||||| Sbjct 563 GCCGCGGAGGAGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 622 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 623 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 682 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 683 AGAAAGAGCTCTCAGTCTGTC 703 >seq6 Length=38222195 Score = 280 bits (310), Expect = 2e-73 Identities = 219/259 (85%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 32788002 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGAGCATCACAGA 32788061 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTG-GAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||||||||||||| | | || | || ||||||||||||||||||| || Sbjct 32788062 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCTAATAGTCCCTCTAAGAAGCTGGC 32788121 Query 121 CACCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | | | || |||| |||||||| | ||||||||||||||| |||||| Sbjct 32788122 CGCGGAGGAGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAATGGAATT 32788181 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 32788182 AACCAGACAAATCGCTCCACCAACTAAGAACGACCATGCACCACCACCCATAGAATCAAG 32788241 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| | | |||||| Sbjct 32788242 AAAGAGCTCTTAGTCTGTC 32788260 Score = 183 bits (202), Expect = 5e-44 Identities = 139/163 (85%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 97 CAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTT 155 |||||||||||||||||||| || | | | | || |||| |||||||| | Sbjct 32774047 CAATAGTCCCTCTAAGAAGCTGGCTGCGGAGGAGACCTCCGCATAGCTAGTTAGCAGGCT 32774106 Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 32774107 GAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCA 32774166 Query 216 TGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||| ||| |||||| Sbjct 32774167 TGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 32774209 Score = 107 bits (118), Expect = 3e-21 Identities = 80/90 (89%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCG--TGCGGCCCAGAACATCTAAGGGCATCACA 59 ||||| || | | ||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 32773363 ACTCGTTGAATACATCAGTGTAGCGCGCGCGTGCGGCC-AGAACATCTAAGGGCATCACA 32773421 Query 60 GACCTGTTATTGCCTCAAACTTCCATTGGC 89 ||||||||||||||||||| |||| ||||| Sbjct 32773422 GACCTGTTATTGCCTCAAATTTCC-TTGGC 32773450 >seq906 Length=1107 Score = 271 bits (300), Expect = 1e-70 Identities = 202/233 (87%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 29 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGG 88 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGC 60 Query 89 CTGGAAGC--CAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-TCGATGGGGCTAT 145 || |||| | |||||||||||||||||| ||| | | | | || |||| Sbjct 61 CT--AAGCGGCCATAGTCCCTCTAAGAAGCTGGCCGCGGAGGAGACCTCCGCATAGCTAG 118 Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||| | ||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 119 TTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTA 178 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 179 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 231 >seq861 Length=1164 Score = 161 bits (178), Expect = 2e-37 Identities = 145/177 (82%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 990 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1049 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| ||||| |||| | |||||||||||||||||| | Sbjct 1050 CCTGTTATTGCCTCAAACTTCC-TTGGC-CTAAGCGGCCATAGTCCCTCTAAGAAGCTGG 1107 Query 120 CCACCAACCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 || | | | | || |||| |||||||| | ||||||||||||||| ||| Sbjct 1108 CCGCGGAGGAGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGG 1164 >seq2 Length=33308843 Score = 149 bits (164), Expect = 1e-33 Identities = 93/100 (93%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 4870287 GTCTCGTTCATTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGGCATGC 4870346 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| ||||||||||||||||| |||| ||||| |||| Sbjct 4870347 ACCACCGCCCATAGAATCAAGAAAAAGCTCTCAATGTGTC 4870386 >seq2769 Length=1159 Score = 129 bits (142), Expect = 9e-28 Identities = 82/88 (93%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1060 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1119 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGC 89 |||||||||||||||||||||| ||||| Sbjct 1120 CCTGTTATTGCCTCAAACTTCC-TTGGC 1146 >seq709 Length=1232 Score = 104 bits (114), Expect = 4e-20 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 70 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11 Query 62 CCTGTTATTG 71 |||||||||| Sbjct 10 CCTGTTATTG 1 >seq872 Length=1054 Score = 102 bits (112), Expect = 1e-19 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 986 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1045 Query 62 CCTGTTATT 70 ||||||||| Sbjct 1046 CCTGTTATT 1054 >seq533 Length=1011 Score = 87.8 bits (96), Expect = 3e-15 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTG-CGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| || | | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 65 ACTCGTTGAATACATCAGTGTAGCGCGCGTGTCGGCCCAGAACATCTAAGGGCATCACAG 6 Query 61 ACCTG 65 ||||| Sbjct 5 ACCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796776472488