Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq2671 178 3e-42 seq3048 174 3e-41 seq481 174 3e-41 seq1027 159 7e-37 seq6 156 8e-36 seq3 91.5 3e-16 >seq2671 Length=1330 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 502 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 561 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | | || ||| | || | | |||||||||||| ||||| Sbjct 562 GTGCAAAGGTTTCCTCGGGTCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 620 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 621 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 680 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 681 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 730 >seq3048 Length=155691 Score = 174 bits (192), Expect = 3e-41 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 108156 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 108215 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 108216 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 108274 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 108275 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 108334 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 108335 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 108384 Score = 174 bits (192), Expect = 3e-41 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 133142 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 133083 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 133082 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 133024 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 133023 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 132964 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 132963 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 132914 >seq481 Length=1014 Score = 174 bits (192), Expect = 3e-41 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 1000 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 941 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 940 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 882 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 881 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 822 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 821 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 772 >seq1027 Length=1020 Score = 159 bits (176), Expect = 7e-37 Identities = 178/231 (77%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| ||||||||||| |||||| |||| Sbjct 575 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAG-GTAACG-AGGC 518 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAA-AAGGG 228 | ||||| | |||| | || ||| | || | | ||||||||||| | ||||| Sbjct 517 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCGAGAAGGG 459 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| || Sbjct 458 AGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACG 399 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 398 GTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 348 >seq6 Length=38222195 Score = 156 bits (172), Expect = 8e-36 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | ||| | |||||| | ||||| |||||||||| ||||||||||| Sbjct 14173053 GGGACATTCTCAAGTAGACAGTTTCTATAGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 14172994 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||| ||||||| ||||| Sbjct 14172993 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGTAAAGGCAGAAGGGA 14172935 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| |||| || ||| Sbjct 14172934 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATTCGACGG 14172875 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 14172874 TGCCGAGTGGAAAGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 14172825 >seq3 Length=27879571 Score = 91.5 bits (100), Expect = 3e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 || || || | |||| | ||| |||||||| |||||| || |||| | ||| | ||||| Sbjct 3925342 TTAACCGCAAGACCCACCCGTCGAGCAGGGATGAAAGTAGGCCTTAGTAATCTGACGGTG 3925401 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | || || || ||||||||||| ||||||||||| ||| || |||||| Sbjct 3925402 CCGAGTGAAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 3925449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982370056448