Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq809 131 2e-28 seq6 127 2e-27 seq906 125 7e-27 seq877 125 7e-27 seq2770 118 1e-24 >seq809 Length=1022 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 195 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 136 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 135 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 78 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 77 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 18 Query 190 T 190 | Sbjct 17 T 17 >seq6 Length=38222195 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| ||| Sbjct 32774700 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTCTGGATACATTAGCAT 32774641 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | ||||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 32774640 GGGATAACATAATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 32774583 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | |||| || |||| |||||||||||||||||||| Sbjct 32774582 TTAACATGGACAGTCGGGGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 32774523 Query 190 T 190 | Sbjct 32774522 T 32774522 Score = 109 bits (120), Expect = 6e-22 Identities = 135/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| ||||| | |||||||| ||| Sbjct 32788751 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCGATGCTCTAGATACATTAGCAT 32788692 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| | ||||||| Sbjct 32788691 GGGATAACATCATAGGATTT-CGGTCCTATTATGTTGGCCTTCGGGATCTGA-GTAATGA 32788634 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||| |||| | |||| || |||| || ||||||||||||||||| Sbjct 32788633 TTAACAGGGACAGTTAGGGGCATTCATATTTCATAGTCAGAGATGAAATTCTTGGATTTA 32788574 Query 190 T 190 | Sbjct 32788573 T 32788573 >seq906 Length=1107 Score = 125 bits (138), Expect = 7e-27 Identities = 140/182 (77%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAG-CAGGCCTTTGCTC-GAATACATTACCA 68 || |||||||||| ||||||||| | |||||| || |||| |||| | |||||||| || Sbjct 723 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGTCAAGCCTACGCTCTGGATACATTAGCA 664 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | |||| ||||| ||| || | ||| || |||||| Sbjct 663 TGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATG 606 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 605 ATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 546 Query 189 AT 190 || Sbjct 545 AT 544 >seq877 Length=1140 Score = 125 bits (138), Expect = 7e-27 Identities = 140/182 (77%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 783 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 842 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 843 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 900 Query 130 TAAATACGGAT-AGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 901 TTAACAGGGACGAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 960 Query 189 AT 190 || Sbjct 961 AT 962 >seq2770 Length=1380 Score = 118 bits (130), Expect = 1e-24 Identities = 136/178 (76%), Gaps = 5/178 (3%) Strand=Plus/Minus Query 15 TACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC--GAATACATTACCATGGA 72 ||||||||| || |||||| | |||||||| |||| |||| | |||||||| ||||| Sbjct 963 TACTTTGAAGAA-TTAGAGTGCTCAAAGCAAGCCTACGCTCTGGTATACATTAGCATGGG 905 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 904 ATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGATTA 847 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 846 ACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511984881920