Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq3048 176 2e-41 seq6 132 2e-28 seq1 77.0 1e-11 >seq3048 Length=155691 Score = 176 bits (194), Expect = 2e-41 Identities = 394/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 106564 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 106623 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 106624 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 106683 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||| ||||||| || | | ||| || |||||||||||| Sbjct 106684 AGCGGATGAGTTGTGGTTAGAGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 106743 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 106744 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 106798 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 106799 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 106856 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| |||| | |||| | | | | Sbjct 106857 CCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTC 106916 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| |||||| ||| ||| | | || Sbjct 106917 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGATCGCTCAGTGATA--AA 106974 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 106975 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 107033 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 107034 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 107092 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 107093 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 107134 Score = 176 bits (194), Expect = 2e-41 Identities = 394/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 134734 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 134675 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 134674 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 134615 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||| ||||||| || | | ||| || |||||||||||| Sbjct 134614 AGCGGATGAGTTGTGGTTAGAGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 134555 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 134554 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 134500 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 134499 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 134442 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| |||| | |||| | | | | Sbjct 134441 CCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTC 134382 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| |||||| ||| ||| | | || Sbjct 134381 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGATCGCTCAGTGATA--AA 134324 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 134323 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 134265 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 134264 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 134206 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 134205 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 134164 >seq6 Length=38222195 Score = 132 bits (146), Expect = 2e-28 Identities = 382/581 (66%), Gaps = 34/581 (6%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 14174646 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 14174587 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || ||||||| |||||| ||| |||||||| ||| Sbjct 14174586 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTTCGAACCGACTGATGTTGAAGAATC 14174527 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||| ||||||| || | | ||| || |||||||||||| Sbjct 14174526 AGCGGATGAGTTGTGGTTAGAGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 14174467 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATC---ACCATCGGGGGTAGAGCACTGTTAT 238 |||||| || || | || || | | || | |||||| ||||||||| Sbjct 14174466 CCGAAATGCGTTGAG---GCGCAGCAGTTGACTGGACATTTAGGGGTAAAGCACTGTTTC 14174410 Query 239 GG-CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------GCA 289 || ||| | | ||| ||||||| | |||||||| |||| | | Sbjct 14174409 GGTGCAGGTCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGACC 14174352 Query 290 TCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGA 338 ||| | || || |||||| |||| | |||| | | | ||| Sbjct 14174351 TCAAAATAACAAGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTCGA 14174292 Query 339 GAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACG 398 |||| || | ||||| | ||||||||||||| |||||| ||| ||| | | || | Sbjct 14174291 GAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGATCGCTCAGTGATA--AAGG 14174234 Query 399 AAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGT 458 | || | ||| ||||| | | || ||| || | |||||| ||| | || ||||||| Sbjct 14174233 AGGTAGGGGTGCAGAGACAACCAAGAGGTTTGCCTAGAAGCAACCA-CCCTTGAAAGAGT 14174175 Query 459 GCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCT 518 | |||| |||| ||| ||||| || ||| || || | || | |||| ||| Sbjct 14174174 GTGTAATAGCTTACTGATCGAGCGCTCTTGCGCCGAAGATGAACGAG-GCTAAGCGATCT 14174116 Query 519 ACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 ||||||| |||| || | | ||| |||||||||||||| Sbjct 14174115 GCCGAAGCTGTGGAAT-GTAAAAATGCATCGGTAGGGGAGC 14174076 >seq1 Length=22681039 Score = 77.0 bits (84), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || || | ||| | |||||||||||| || ||| ||| | | | | | Sbjct 10735310 CGAGAGGGAAACAACCTGGATCACCAGCTAAGGCCCTTAA-TGATCGCTCAATGACA--A 10735366 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| ||||| | |||| ||| || | ||||||||| | || |||| Sbjct 10735367 AAGAGGTAGGGGTGCATAGACAACCAGGAGGTTTGCGTAAAAGCAGCCAC-CTTTGAAAG 10735425 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTT 514 ||||||||| |||||| | |||||| || ||| || || ||| ||| || | Sbjct 10735426 AGTGCGTAATAGCTCATTGGTCGAGCGCTCTTGCGCCAATGATGAATGGGG--CTATGCG 10735483 Query 515 GTCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 |||| |||||| ||||||| | | ||| ||||||| |||||| Sbjct 10735484 ATCTATCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAAGGGAGC 10735527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689548500992