Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 159 3e-34 >seq6 Length=38222195 Score = 159 bits (176), Expect = 3e-34 Identities = 575/879 (65%), Gaps = 28/879 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || | || ||| || ||| |||||||| ||||| || || || |||| Sbjct 28139598 TGTTCCCGATTCAATACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCT 28139539 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||||||||| | ||||| | ||||||| || | || Sbjct 28139538 GGACCGCCGAGGAGGTCGATCTCGATCAAGACCAGCGCCACTGGGAAACCCTAACCCCCG 28139479 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || | || ||||| | || || | || ||||| ||||| || ||||| ||||| Sbjct 28139478 GCGAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTAC 28139419 Query 61244 ATGAGAAT-TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||||| || |||| ||| | | ||||||| || || |||||||||||| ||| Sbjct 28139418 TCGAGAATCTTGCCGGAAGGTT-CATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTC 28139360 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 |||||||||||||| || || ||||| ||||||| ||||||||||| | ||| |||| Sbjct 28139359 TACGGCTTCCAGATCGCGATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAG 28139300 Query 61363 ACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC 61421 || ||||||| || ||| || | || || | ||| ||| |||| || || || Sbjct 28139299 ACCTACATCAAAGACTCGGACGAGAAGT-CCCGTCTCTTCCGGGCCGTCGACACCATCCC 28139241 Query 61422 GGCGGTGAAGCGGAAA--GCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 | | ||| ||| ||| | |||||| | || |||||| | | | | || Sbjct 28139240 --TTGCGTCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGG---CTCCGAAACT 28139186 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 || | || || | |||| || || || || || | || ||| ||| || Sbjct 28139185 TTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTC 28139126 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||| || |||||| | || || || || | ||||| |||||||||||| || ||| Sbjct 28139125 TGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAG 28139066 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTA 61658 ||||| || || || || ||| | || || || || || || || || | | | | Sbjct 28139065 TTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCTT-CTCTACTCCCTCCT 28139007 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTG-GGTGAGATTGTTCGTGAGGCGGTAACTA 61717 | | |||| | || | |||||||| ||| || | || || || | ||||| | Sbjct 28139006 CCGGATGAAGC-TC--ACCGAGGAGCGCGTGAAGTCA-ATCGTGCGGAACGCGGTTGACA 28138951 Query 61718 TCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGG 61775 | || |||| || |||| ||||| || || | | | | || ||||| ||| Sbjct 28138950 TAGAGAAGGAGTTCGTCTG--CGACGCGTTACCGTGCGCCTTAGTTGGGATGAACGGTGA 28138893 Query 61776 ACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG-TAT-- 61832 || ||| ||||| || || || || || || | ||| ||| | ||||| ||| Sbjct 28138892 TCTGATGGGTCAGTACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATATGG 28138833 Query 61833 GAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGG 61892 ||| | | ||| || | | ||||||||||||| ||||| ||||| || | || Sbjct 28138832 GAAAC---TGTATGATGTGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGG 28138776 Query 61893 CAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| ||||| || ||||| | || || || || || Sbjct 28138775 GAAGACCAATTTCTTTGAGAAGAGAGTTGGGGAGTACCA 28138737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397553231342720