Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq603134 389 6e-106 seq608558 352 4e-95 seq371368 351 1e-94 seq614569 264 2e-68 seq85859 167 3e-39 >seq603134 Length=1696 Score = 389 bits (430), Expect = 6e-106 Identities = 242/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 397 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 454 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 455 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 514 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||| Sbjct 515 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGATTACATCAGTGTAGTGCGCGTGCGG 574 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | Sbjct 575 CCCAGAACATCTAAGGGCATCACAGACTTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 634 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 635 GCCATAGTCCCTCTAA 650 >seq608558 Length=4881 Score = 352 bits (390), Expect = 4e-95 Identities = 220/234 (94%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 12 AGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGA 71 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 2686 AGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-CCTCGTTGAAGA 2629 Query 72 CCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGT 131 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2628 CCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCGAAGCCTGT 2569 Query 132 CGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATC 191 ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 2568 CGGCCAAGGCTATAGACTCGTTGATTACATCAGTGTAGTGCGCGTGCGGCCCAGAACATC 2509 Query 192 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245 |||||||||||||||| |||||||||||||||||||| |||||||| |||||| Sbjct 2508 TAAGGGCATCACAGACTTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCAT 2455 >seq371368 Length=682 Score = 351 bits (388), Expect = 1e-94 Identities = 229/247 (93%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||| | Sbjct 312 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACACACGCTTACTAGGAATT-C 255 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 254 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 195 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCG--CGCGTGC 178 ||||| | |||||||||||| ||||||||||||||||||| ||||||||| ||||||| Sbjct 194 CCCGGGCATGTCGGCCAAGGCTATAGACTCGTTGAATACATTAGTGTAGCGCGCGCGTGC 135 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 || ||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||| Sbjct 134 GG-CCAGAACATCTAAGGGCATCACAAACCTGTTATTGTCTCAAATTTCCTTGGCCTAAG 76 Query 239 AGGCCAT 245 |||||| Sbjct 75 CGGCCAT 69 >seq614569 Length=4450 Score = 264 bits (292), Expect = 2e-68 Identities = 199/229 (87%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| ||||||| |||||||||||||||| | Sbjct 486 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 429 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 428 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 369 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| || || ||| ||||| | | |||||||| | ||||||||||||||||||| Sbjct 368 ACCCAGATCTTTCGAACAAGGA-AGAAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 310 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 261 >seq85859 Length=662 Score = 167 bits (184), Expect = 3e-39 Identities = 176/226 (78%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||| ||| ||||| ||| ||||| |||||| | Sbjct 421 GTACAAAGGGCAGGGACGTAATCAAGGCGTGCTA-ATGACACGCCTTTACTGGGAATT-C 364 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||| ||| | ||||| | ||||| | ||||| | || Sbjct 363 CTCGTTCATGTGGAACAATTTCAAGCCACAATCCCAAGCACGAAGGTGTTTCAGCGGGTT 304 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||||| || |||| || ||| | || ||||||||||||||| Sbjct 303 ACCCGAGCCTCTCGGCCAGGGA---AGACACGCTGACACCTCCATTGTAGCGCGCGTGCG 247 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 246 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 747439837690