Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq614569 890 0.0 seq363061 340 7e-91 seq610643 232 3e-58 seq240458 208 3e-51 seq42106 161 4e-37 seq611018 150 7e-34 seq3688 145 3e-32 seq314484 136 2e-29 seq432205 127 8e-27 seq220754 116 2e-23 seq343836 98.7 4e-18 seq290027 84.2 9e-14 seq513337 82.4 3e-13 >seq614569 Length=4450 Score = 890 bits (986), Expect = 0.0 Identities = 598/665 (90%), Gaps = 2/665 (0%) Strand=Plus/Plus Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79 || ||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1375 CCATGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTA 1434 Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 AATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 1494 Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1495 AGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCG 1554 Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACC-GGCCCCTCGGCCGGTGCACTCTTCTG 258 || ||||||||||||| ||| |||| || || ||| | || | |||| | | Sbjct 1555 CTGGCAACCAGACTTGGGCGCTGTTGATCCGTTAGGGTTCTCC-CTGGGGTACTCAGCAG 1613 Query 259 CGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTC 318 | |||||||||||| | | ||| ||| ||| ||||||| |||||||||| ||||| Sbjct 1614 TGCGCAGGCCAGCATCGGTTTGGGGGGTTGGAGAAAGGCCGGTGGAATGTGGCTGCCTTC 1673 Query 319 GGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGC 378 ||| ||||||||||| ||||| |||| ||| || |||| |||| ||||||| |||| Sbjct 1674 GGGCAGTGTTATAGCCACCGGTGGCATGCAGCCTCCCCGGACCGAGGACCGCGCTTCGGC 1733 Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 ||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct 1734 TAGGATGCTGGCGTAATGGTTGTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAA 1793 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 |||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||| | Sbjct 1794 CATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAG 1853 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1854 AACCCGCAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 1913 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1914 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 1973 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1974 CTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 2033 Query 679 GGCGA 683 ||||| Sbjct 2034 GGCGA 2038 >seq363061 Length=615 Score = 340 bits (376), Expect = 7e-91 Identities = 218/234 (93%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 236 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTA 177 Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 176 AATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAA 117 Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 116 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 57 Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCG-GCCGGTGCACT 252 ||||| |||||||| |||||| | | ||| |||| | ||| ||||||| ||| Sbjct 56 CTTGCGACCAGACTCGCCCGC-GGGGTTCAGCCGG-CATTCGTGCCGGTGTACT 5 >seq610643 Length=986 Score = 232 bits (256), Expect = 3e-58 Identities = 223/280 (80%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | | Sbjct 548 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGATTA 489 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGA-GGGTGCACCATCGA 521 ||||||| | || || ||| | || | | |||| ||| | | |||||||||| ||| Sbjct 488 AACCCGTAAGGCGCAAGGAAGCT-AATGC--GCGGGATCCCTTTACGGGTGCACCACCGA 432 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| | | || || || |||| |||||| |||| |||||| ||||||| Sbjct 431 CCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGTCTGTCGGGACCTGAAAGAT 372 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | Sbjct 371 GGTGAACTATGCCTGAGCGGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGAT 312 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || ||||||||||| ||||| | ||||||||| |||| Sbjct 311 ACTAACGTGCAAATCGTTCGTCTGACTTGGGTATAAGGGC 272 Score = 95.1 bits (104), Expect = 5e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| || ||||||||||| | ||||||| | || ||||||||||||| || Sbjct 985 GCTAAATACGGGTGAGAGACCGATATCAAACAAGTACCGCGAGGGAAAGATGAAAAGGAC 926 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| ||||||||| ||| || | |||||||||| ||||||||| Sbjct 925 TTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTTAGGAGGGAAGCG 879 >seq240458 Length=333 Score = 208 bits (230), Expect = 3e-51 Identities = 151/175 (86%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 210 TGTGATACGCTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 151 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | ||||| |||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 150 GCCATCTAAGGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 91 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||||||| |||||| ||||||||||||| || ||||||||||| ||||||||| Sbjct 90 TGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGCCAAAAGGGAAG 36 >seq42106 Length=3583 Score = 161 bits (178), Expect = 4e-37 Identities = 213/290 (73%), Gaps = 14/290 (5%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 |||||||||||| ||||||||||||||||| | |||| | ||||||| |||||| | | Sbjct 1973 CGGCCCGTCTTGAAACACGGACCAAGGAGTGTGACATGTGTGCGAGTCAATGGGTGATTA 1914 Query 464 AACCCGT-GCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGA-GGGTGCACC----- 516 ||||||| ||| || | ||| || | | | || ||| | | ||||||||| Sbjct 1913 AACCCGTAAGGCGCAA-GGAAGCTAATG--CGAGAGATCCCTTTACGGGTGCACCGTCAG 1857 Query 517 ---ATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACC 573 | | ||| | | |||| | | || || || |||| |||||| |||| |||| | Sbjct 1856 CCGACCAACCAACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGAAC 1797 Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||| ||||||||||| || ||| |||||||||| |||||||| | |||||||| | Sbjct 1796 CGAACAATGGTGAACTAGGCTTGAGCGAGGTGAAGCCAAAGGAAACTATTGTGGAGGCCC 1737 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || | ||| | ||||||||| ||||| | |||||||||| ||||| Sbjct 1736 GCATCGATACTGACATGCAAATCGTTCGTCTGACTTGGGTATAGAGGCGA 1687 >seq611018 Length=2696 Score = 150 bits (166), Expect = 7e-34 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| |||||| |||||||||||||||||| | || |||| ||||||||| || || || Sbjct 1859 TCGGCGAGTCAGGTTGTTTGGGAATGCAGCCCCAATTGGGCGGTAAATTTTGTCCAAGGC 1800 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 1799 TAAATACAGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 1740 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195 || ||||||||| ||| || | ||||||||| | ||||| Sbjct 1739 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGA 1699 >seq3688 Length=5219 Score = 145 bits (160), Expect = 3e-32 Identities = 104/120 (87%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||||| |||||||||||||||||||||||||| ||||||||| ||| |||||| ||| Sbjct 3236 TGTTGGTACCCGAAAGATGGTGAACTATGCCTGGCCAGGGTGAAGTCAGGGGAAACCCTG 3177 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || || |||| ||||| |||||||||||||||||| | ||||||||||||||| Sbjct 3176 ATGGAAGCCCGTAGCGATTCTGACGTGCAAATCGATCGTCAGAGCTGGGTATAGGGGCGA 3117 Score = 123 bits (136), Expect = 1e-25 Identities = 117/147 (80%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| ||||||| |||| ||| |||||| | | ||||| ||||||| Sbjct 3923 GAGTCGGTTTGCTTGAAAATGCAGACCTAAGAGGGTGGTAAACTCCATCTAAGGCTAAAT 3864 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| | Sbjct 3863 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 3805 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185 |||||||| || || |||||||| || Sbjct 3804 GAGAGAGTTCAAGAGTACGTGAAACTG 3778 >seq314484 Length=887 Score = 136 bits (150), Expect = 2e-29 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| ||||||| | || || || Sbjct 591 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGTAGTAAATTCCGTCCAAGGC 650 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||| | ||||||| ||||| ||||||| | || || ||||||||||| |||| Sbjct 651 AAAATACGAGTGAGAGACCAATAGCAAACAAGTACCGCGAGCGCAAGATGAAAAGGACTT 710 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 || ||||||||| ||| || | ||||||||||| ||||||| Sbjct 711 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTTGGGAGGGAAG 753 >seq432205 Length=394 Score = 127 bits (140), Expect = 8e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || | | |||||||| | || | || Sbjct 160 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGAGCGGTAAATTCCGTCGATGGC 101 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| ||||||||||| ||||||| | || |||||||||||| |||| Sbjct 100 TAAATACGGGCGAGAGACCGATAAGAAACAAGTACCGCGAGGGAAAGATGAAAAAGACTT 41 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGG 194 || ||||||||| ||| || | ||||||||| | |||| Sbjct 40 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGG 1 >seq220754 Length=346 Score = 116 bits (128), Expect = 2e-23 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || || |||| |||||| |||| |||| ||||| ||||||||||||||| ||| Sbjct 4 GAAGGGTTCGAGTGTGAGCATGCCTGTCGGGAACCGAACGATGGTGAACTATGCTTGAGC 63 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 || ||||||| |||||||| |||||||| |||| || | ||| | |||||||| | Sbjct 64 GAGGCGAAGCCAAAGGAAACTACAGTGGAGGCCCGCATCGATACTGACATGCAAATCATT 123 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 |||| | |||||||||| ||||| Sbjct 124 CGTCTGACTTGGGTATAGAGGCGA 147 >seq343836 Length=734 Score = 98.7 bits (108), Expect = 4e-18 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| ||||||| |||||||||| | || ||| |||||||| | || || || Sbjct 623 TCGGCGAGTCGGGTTGTTTAGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 682 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||| ||| | ||||||||||| ||||||| | || |||||||||| Sbjct 683 TAAATACGGGCGATAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAA 734 >seq290027 Length=307 Score = 84.2 bits (92), Expect = 9e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| | ||||| |||||||||||||||||| | || ||| |||||||| | || | || Sbjct 195 TCGGCAAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCATGGC 136 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTA 128 |||||| ||| ||||||||||| | ||||||| Sbjct 135 TAAATACGGGCGAGAGACCGATAACAAACAAGTA 102 >seq513337 Length=2268 Score = 82.4 bits (90), Expect = 3e-13 Identities = 73/91 (80%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 |||||||||||| ||| ||||| |||||||| |||||| ||||| | ||| | ||| Sbjct 1857 AACTATGCCTGAGCGGGGCGAAGCTAGAGGAAATTCTGGTCGAGGC---CCGCGATACTG 1913 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATA 676 |||| |||||| ||||| ||||||||||| Sbjct 1914 ACGTGTAAATCGTTCGTCTGATTTGGGTATA 1944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2066573029300