Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq49083 302 9e-80 seq28941 82.4 2e-13 >seq49083 Length=9791 Score = 302 bits (334), Expect = 9e-80 Identities = 281/353 (80%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || | |||||||| || || | ||||||||||| | |||||| Sbjct 8087 GCATCTTCACAAACATGTCTATTTCACCAAGCCTCTCTCCGAGACAGTGCCTAGATCGTT 8028 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 8027 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTA 7968 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||| ||||| || ||||||| || | ||| | | | || | || Sbjct 7967 TAGTTACGGCCTCCGTTCACCGGGGCTTCGGTCGCCGGCTCCTCTGTCATCAGGTCACCA 7908 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| ||||||||||||| || |||||| ||||| |||||| Sbjct 7907 ACTTCCTTGACCTTCCGGCACTAGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 7848 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || | |||| |||||||||||||||||||| |||||| || ||||| ||| | Sbjct 7847 GCGAAGACCTATGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 7788 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 7787 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 7736 >seq28941 Length=4010 Score = 82.4 bits (90), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 1/60 (2%) Strand=Plus/Minus Query 306 GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTT-AACAATAGTTCTC 364 ||||| ||||||||| |||||||||||||||||||| ||||||||| |||||| |||||| Sbjct 2522 GGCACACCTTCTCCCAAAGTTACGGGGTCATTTTGCTGAGTTCCTTCAACAATGGTTCTC 2463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1055749737216