Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq614569 361 9e-98 seq603134 253 3e-65 seq85859 228 1e-57 seq577335 187 4e-45 seq33656 187 4e-45 seq608558 152 8e-35 seq577814 152 8e-35 seq274212 113 7e-23 seq210820 113 7e-23 seq371368 95.1 2e-17 seq439246 77.0 5e-12 >seq614569 Length=4450 Score = 361 bits (400), Expect = 9e-98 Identities = 235/257 (91%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 283 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 282 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 224 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| ||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 223 ACCAGCCAAAGCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 164 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 163 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAA 104 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 103 AGAGCTCTCAATCTGTC 87 >seq603134 Length=1696 Score = 253 bits (280), Expect = 3e-65 Identities = 214/260 (82%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 541 ACTCGTTGATTACATCAGTGTAGTGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 600 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 | |||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 601 CTTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 658 Query 120 CCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || | | | || |||| |||||||| | || | |||||| ||| ||| Sbjct 659 CCGTGGAGGAGACCTCTGCATAGCTAGTTAGCAGGCTGAGTTTTCGTTCATTAAAAAAAT 718 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 719 TAACCAGACAAATCGCTCCGCCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 778 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 779 GAAAGAGCTCTCACTCTGTC 798 >seq85859 Length=662 Score = 228 bits (252), Expect = 1e-57 Identities = 205/254 (81%), Gaps = 15/254 (6%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 264 CATTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 206 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----------CCAGCCAC-C 124 | || | |||| ||||| | |||||||||||||| || || | | Sbjct 205 ATCTCGTAC-GGCTAAAAGCCGTTTGTCCCTCTAAGAAGATTTGTCATCGCCGGCTGCAC 147 Query 125 AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | || || | |||||||| ||| | |||||||||||||||| |||||| || Sbjct 146 AAGGA-AGCCGGACCGACTATTTAGTAGGCCAGAGTCTCGTTCGTTATCGCAATTAAGCA 88 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 87 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACTAAATCAAGAAAGA 28 Query 245 GCTATCAATCTGTC 258 ||| |||||||||| Sbjct 27 GCTTTCAATCTGTC 14 >seq577335 Length=3288 Score = 187 bits (206), Expect = 4e-45 Identities = 140/163 (86%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 97 CAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTT 155 |||||||||||||||||||| ||| | | | | || |||| |||||||| | Sbjct 703 CAATAGTCCCTCTAAGAAGCTGGCCGCGGAGGAGACCTCCGCATAGCTAGTTAGCAGGCT 762 Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 763 GAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCA 822 Query 216 TGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||| ||| |||||| Sbjct 823 TGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 865 >seq33656 Length=5314 Score = 187 bits (206), Expect = 4e-45 Identities = 140/163 (86%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 97 CAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTT 155 |||||||||||||||||||| ||| | | | | || |||| |||||||| | Sbjct 1008 CAATAGTCCCTCTAAGAAGCTGGCCGCGGAGGAGACCTCCGCATAGCTAGTTAGCAGGCT 1067 Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1068 GAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCA 1127 Query 216 TGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1128 TGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 1170 >seq608558 Length=4881 Score = 152 bits (168), Expect = 8e-35 Identities = 148/187 (79%), Gaps = 5/187 (3%) Strand=Plus/Minus Query 75 CAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG 132 ||||||||| | | || |||| | |||||||||||||||||| ||| | | | Sbjct 2378 CAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGGCCGTGGAGGAGAC 2321 Query 133 -TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 || |||| |||||||| | || | |||||| ||| |||||||||||||||| Sbjct 2320 CTCTGCATAGCTAGTTAGCAGGCTGAGTTTTCGTTCATTAAAAAAATTAACCAGACAAAT 2261 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2260 CGCTCCGCCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCA 2201 Query 252 ATCTGTC 258 |||||| Sbjct 2200 CTCTGTC 2194 Score = 134 bits (148), Expect = 2e-29 Identities = 101/117 (86%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2553 ACTCGTTGATTACATCAGTGTAGTGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 2494 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGC 116 | |||||||||||||||||||| | | || |||| | |||||| ||||||||||| Sbjct 2493 CTTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCACTCTAAGAAGC 2439 >seq577814 Length=706 Score = 152 bits (168), Expect = 8e-35 Identities = 107/122 (88%), Gaps = 4/122 (3%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT----AACCAGACAAATCACTC 196 |||| ||||||| | | ||||||||| ||| ||||||| ||||||||||||||||| Sbjct 370 GCTAATTAGCAGACTGATGTCTCGTTCATTAACGGAATTAATTAACCAGACAAATCACTC 429 Query 197 CACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 |||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| || Sbjct 430 CACCAACTAAGAACGGGCATGCACCACCGCCCATAGAATCAAGAAAGAGCTCTCAATGTG 489 Query 257 TC 258 || Sbjct 490 TC 491 >seq274212 Length=314 Score = 113 bits (124), Expect = 7e-23 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||| ||| || ||||||| |||||||||||| ||||||||||| |||| ||| | Sbjct 194 GTCTCGTTCATTAACGAAATTAACTAGACAAATCACTTCACCAACTAAGTACGGTCATAC 253 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||| |||||| |||||||||||||| | ||| |||| Sbjct 254 ATCACCGCCCATAAAATCAAGAAAGAGCCCTTAATGTGTC 293 >seq210820 Length=354 Score = 113 bits (124), Expect = 7e-23 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||| ||| || ||||||||| |||||| ||||||||||||| ||||| || || Sbjct 152 GTCTCGTTCATTAACGAAATTAACCAAACAAATTACTCCACCAACTATAAACGGTCACGC 211 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||| |||||||||| |||| | ||| |||| Sbjct 212 ACCACCGCCCATATAATCAAGAAAAAGCTCTTAATGTGTC 251 >seq371368 Length=682 Score = 95.1 bits (104), Expect = 2e-17 Identities = 77/90 (86%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCG--TGCGGCCCAGAACATCTAAGGGCATCACA 59 ||||| || | | | ||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 168 ACTCGTTGAATACATTAGTGTAGCGCGCGCGTGCGGCC-AGAACATCTAAGGGCATCACA 110 Query 60 GACCTGTTATTGCCTCAAACTTCCATTGGC 89 ||||||||||| |||||| |||| ||||| Sbjct 109 AACCTGTTATTGTCTCAAATTTCC-TTGGC 81 >seq439246 Length=1970 Score = 77.0 bits (84), Expect = 5e-12 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 |||||||| ||| | | | ||||||||||| ||||| ||||| || ||| ||||| || Sbjct 787 AAGGTCTCATTCATGAACAAAATTAACCAGAAAAATCGCTCCATCATCTACGAACGATCA 728 Query 216 TGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 | || || ||||||| ||| |||||| |||| || ||| Sbjct 727 TACATCATGACCCATAAAATGAAGAAATAGCTCCCAGTCT 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791968168446