Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq55106 147 4e-33 seq242 132 1e-28 seq548723 109 1e-21 seq19004 102 2e-19 >seq55106 Length=6954 Score = 147 bits (162), Expect = 4e-33 Identities = 139/176 (79%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCAC-TGCTGCCTCCCGTA 59 ||| | ||| | | ||| |||| ||||||| | || || |||| | |||||||||||||| Sbjct 3205 GGCATTGCTCCGTTAGGATTTCGCCCATTGCGGAAAATTCCCCCCATGCTGCCTCCCGTA 3264 Query 60 GGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGA 119 |||||||||||||||||| ||| ||| ||||| | ||| |||||| | || ||||| || Sbjct 3265 GGAGTCTGGGCCGTGTCTTAGTTCCAGTGTGGTTGATCATCCTCTCGGACCAGCTACTGA 3324 Query 120 TCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 || ||| |||||| ||||| |||| |||||| |||||| | | ||||||| || Sbjct 3325 TCATCGCCTTGGTAAACTATTGCCTCAGCAACTAGCTAATCAGACACGAGCCCCTC 3380 >seq242 Length=4557 Score = 132 bits (146), Expect = 1e-28 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||||| || | | ||||||||| ||| ||||||||||||| || Sbjct 542 TCAGGCTTTCGCCCATTGTGGAAATTTCTCCACTGCTGTCTCTTGTAGGAGTCTGGGTCG 483 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||| | ||||| | ||| || || | || ||||| |||| ||| |||||| Sbjct 482 TGTCTCAGTCCTAGTGTGGTTGATCATCCCCTTGGGCCAGCTACTGATCATCGCCTTGGT 423 Query 133 GGGCTATTATCTCACCAACTACCTAATC 160 |||||| ||||||||||| |||||| Sbjct 422 AAGCTATTGCCTCACCAACTAACTAATC 395 >seq548723 Length=4606 Score = 109 bits (120), Expect = 1e-21 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 3078 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 3137 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 ||||||||||||||||||| |||||| | ||| || Sbjct 3138 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 3172 >seq19004 Length=6934 Score = 102 bits (112), Expect = 2e-19 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93 || || |||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 6931 AAAATTCCCCACTGCTGCCTCCTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCT 6872 Query 94 GTTCAACCTCTCAG 107 | ||| |||||||| Sbjct 6871 GATCATCCTCTCAG 6858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 992150355456