Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq56595 150 4e-34 seq614892 77.0 8e-12 seq405167 77.0 8e-12 >seq56595 Length=4215 Score = 150 bits (166), Expect = 4e-34 Identities = 152/194 (78%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||| ||| | || ||||| | ||| || ||||| | | |||||||| Sbjct 2125 CCACAGCTTCGATAGATCGCATA-GCCCCATT-CATCATTGGCGCAAGAGCGCTTGACCA 2068 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||||||||| | ||||||||| | || ||||||||||||||||| Sbjct 2067 ATGAGCTATTACGCACTCTTTCAAAGGTGGCTGCTTTTACGCAAACCTCCTGGTTGTCTA 2008 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || || ||| || |||| | || ||| |||||||||||| ||||| || Sbjct 2007 TGCACCCCTACCTCTTTTGTCATTGAGCGATCA-TTAAGGGCCTTAGCTGGTGATCCAGG 1949 Query 387 CTGTTTCCCTCTCG 400 ||||||||||||| Sbjct 1948 TTGTTTCCCTCTCG 1935 >seq614892 Length=4080 Score = 77.0 bits (84), Expect = 8e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||||||||| ||||||||||||| ||||| |||| | || |||||||||| ||||| Sbjct 506 AGTGAGCTATTACACACTCTTTCAAGGGTGGCTACTTCTAGGCAAACCTCCTGGCTGTCT 565 >seq405167 Length=2297 Score = 77.0 bits (84), Expect = 8e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||||||||| ||||||||||||| ||||| |||| | || |||||||||| ||||| Sbjct 2134 AGTGAGCTATTACACACTCTTTCAAGGGTGGCTACTTCTAGGCAAACCTCCTGGCTGTCT 2075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1170228624384