Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq21795 120 5e-25 seq5169 105 1e-20 seq52011 95.1 2e-17 seq535000 82.4 1e-13 seq7782 80.6 4e-13 >seq21795 Length=13898 Score = 120 bits (132), Expect = 5e-25 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 ||||||| ||| |||||| |||| ||||||||||||||||||| ||| || |||||||| Sbjct 10022 AACTGGTACACTAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCA 10081 Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | | |||||||| |||||| ||||||||||||||| |||||||||| Sbjct 10082 ATGCTTTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTG 10132 >seq5169 Length=4339 Score = 105 bits (116), Expect = 1e-20 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 |||||||| | ||| |||||||||| ||| |||||||||||||| ||||| || | Sbjct 2412 ACGCCCACACCAAATATGGACCGAACTAGCTCACGACGTTCTGAACCTAGCTCACGAACT 2353 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267 |||||||| |||| || || ||||||||| || ||| || ||||| | | || |||| Sbjct 2352 ACTTTAATGAGCGAGCAACCAAACCCTTGGAACATACCACAACCCCAAGTGGCGAAGAGC 2293 Query 268 CGACATCG 275 |||||||| Sbjct 2292 CGACATCG 2285 >seq52011 Length=5606 Score = 95.1 bits (104), Expect = 2e-17 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 ||||||| || ||| |||| ||| |||||| ||| ||||| |||| ||||| | | | Sbjct 1038 ACGCCCAAACCGAATATGGACTGAAGTGTCTCACGAAGTTCTAAACCTAGCTCACATACT 1097 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGC 267 |||||||| |||| || || ||||||||| || ||| || ||||||| | | |||| Sbjct 1098 ACTTTAATGAGCGAGCAACCAAACCCTTGGAACATACCACAACCCCAGGTGGCAAAGAGC 1157 Query 268 CGACATC 274 ||||||| Sbjct 1158 CGACATC 1164 >seq535000 Length=2480 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 ||||||||||||||| ||||||| |||||| ||||| ||| || |||||||||||||||| Sbjct 607 GGACCGAACTGTCTCACGACGTTATGAACCTAGCTCACGTACCGCTTTAATGGGCGAACA 548 Query 225 GCC 227 || Sbjct 547 ACC 545 >seq7782 Length=2742 Score = 80.6 bits (88), Expect = 4e-13 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 174 TGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCC 233 |||||| |||||||||||||| ||||| ||| || |||||||| |||| | | |||||| Sbjct 86 TGTCTCACGACGTTCTGAACCTAGCTCACGTACCGCTTTAATGAGCGAGTAACTCAACCC 145 Query 234 TTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| || || ||||||| | | |||||||||||| Sbjct 146 TTGGAACATATAAATTCCCCAGGTGGCAAAGAGCCGACATCG 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 776065193176