Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq55106 187 6e-45 seq242 161 2e-37 seq548723 150 4e-34 seq19004 113 1e-22 >seq55106 Length=6954 Score = 187 bits (206), Expect = 6e-45 Identities = 156/190 (82%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 7 TACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGT 66 ||| ||||| ||||||||| | | || ||||||| ||| | | ||| || ||||||||| Sbjct 3176 TACGACCCGTAGGCCTTCTACCTCCAAGCGGCATTGCTCCGTTAGGATTTCGCCCATTGC 3235 Query 67 GCAATATTCCCCAC-TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 125 | || ||||||| | ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 3236 GGAAAATTCCCCCCATGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTTAGTTCCAGTGTG 3295 Query 126 GCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAA 185 | || |||||||||| ||||||||| |||| |||||| ||| | ||| || | ||| Sbjct 3296 GTTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAACTATTGCCTCAGCAA 3355 Query 186 CTAGCTAATC 195 |||||||||| Sbjct 3356 CTAGCTAATC 3365 >seq242 Length=4557 Score = 161 bits (178), Expect = 2e-37 Identities = 149/189 (79%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 7 TACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGT 66 ||| ||||| ||||||| | | | || ||||||| ||| |||||||| |||||||||| Sbjct 583 TACGACCCGTAGGCCTTTTACCTCCATGCGGCATTGCTCTGTCAGGCTTTCGCCCATTGT 524 Query 67 GCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGG 126 | || ||| ||||||||| ||| |||||||||||| ||||||||||| | ||||||| Sbjct 523 GGAAATTTCTCCACTGCTGTCTCTTGTAGGAGTCTGGGTCGTGTCTCAGTCCTAGTGTGG 464 Query 127 CTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAAC 186 || |||||| || | ||||||| |||| |||||| ||| || ||| || | ||||| Sbjct 463 TTGATCATCCCCTTGGGCCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAAC 404 Query 187 TAGCTAATC 195 || |||||| Sbjct 403 TAACTAATC 395 >seq548723 Length=4606 Score = 150 bits (166), Expect = 4e-34 Identities = 127/155 (82%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 3038 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 3097 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 3098 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 3157 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATC 156 |||||||| |||||| |||||||||| | ||| Sbjct 3158 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATC 3192 >seq19004 Length=6934 Score = 113 bits (124), Expect = 1e-22 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128 || ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| Sbjct 6931 AAAATTCCCCACTGCTGCCTCCTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCT 6872 Query 129 GGTCATCCTCTCAGA 143 | ||||||||||||| Sbjct 6871 GATCATCCTCTCAGA 6857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1214748191616