Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq548723 235 2e-59 seq55106 185 3e-44 seq242 168 2e-39 seq561668 123 7e-26 seq19004 98.7 3e-18 seq39344 80.6 8e-13 >seq548723 Length=4606 Score = 235 bits (260), Expect = 2e-59 Identities = 214/265 (81%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||| Sbjct 3172 GGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGG 3113 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC- 344 ||||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | Sbjct 3112 GGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCA 3053 Query 345 -TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGC 401 | | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||| Sbjct 3052 ATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGC 2993 Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461 ||||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| Sbjct 2992 CCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACG-GGGGGGCAAGTGTTCTTCGGAAT 2934 Query 462 TACTGGGGCGTAAAGGGTGCGTAGG 486 ||| |||||||||||| |||||| Sbjct 2933 GACT-GGGCGTAAAGGGCACGTAGG 2910 >seq55106 Length=6954 Score = 185 bits (204), Expect = 3e-44 Identities = 160/197 (81%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 || ||||||||||||||||| | ||| || | |||||||||||| |||||||||| | Sbjct 3372 CGTGTCTGATTAGCTAGTTGCTGAGGCAATAGTTTACCAAGGCGATGATCAGTAGCTGGT 3313 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| ||||| ||||||| |||||||| ||| ||||||||||||||||| Sbjct 3312 CCGAGAGGATGATCAACCACACTGGAACTAAGACACGGCCCAGACTCCTACGGGAGGCAG 3253 Query 280 CA-GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG 338 || | ||||||| || | |||||||| ||| ||| | | ||||| ||||| || | | Sbjct 3252 CATGGGGGGAATTTTCCGCAATGGGCGAAATCCTAACGGAGCAATGCCGCTTGGAGGTAG 3193 Query 339 AAGGCCTTCGGGTCGTA 355 ||||||| ||||||||| Sbjct 3192 AAGGCCTACGGGTCGTA 3176 >seq242 Length=4557 Score = 168 bits (186), Expect = 2e-39 Identities = 153/193 (79%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 |||||||||| |||||||| ||| || |||||||||||||| |||||||||| | || Sbjct 391 GTCTGATTAGTTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGCCCA 450 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 || || ||||| ||||| | | ||||||||||| ||| |||||||| ||| |||||| Sbjct 451 AGGGGATGATCAACCACACTAGGACTGAGACACGACCCAGACTCCTACAAGAGACAGCAG 510 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 ||| ||| || |||||||||| ||||||||| ||||| ||||| || | |||| Sbjct 511 TGGAGAAATTTCCACAATGGGCGAAAGCCTGACAGAGCAATGCCGCATGGAGGTAAAAGG 570 Query 343 CCTTCGGGTCGTA 355 ||| ||||||||| Sbjct 571 CCTACGGGTCGTA 583 >seq561668 Length=2208 Score = 123 bits (136), Expect = 7e-26 Identities = 125/161 (78%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| ||| ||||||||| |||||| ||| ||||| |||||||| || ||| Sbjct 382 AGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCTAGCAATATCGCGTGAGTGAAGAA 441 Query 341 GGCC--TTCGGGTCGTAAAGCTCTGTCCTCAAGGAA--GATAATGACGGTACTTGAGGAG 396 || | | | | | |||||||||| || || || ||| ||||| ||| ||||| Sbjct 442 GGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCCCGATCATGACAAGACTCGAGGAA 501 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||||| |||||||| |||||||| ||||||||||| ||| Sbjct 502 GAAGCCCTGGCTAACTCCGTGCCAGAAGCCGCGGTAAGACG 542 >seq19004 Length=6934 Score = 98.7 bits (108), Expect = 3e-18 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| |||||| ||| |||||||||||| ||| |||||||| |||||||| Sbjct 6858 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACAGGAGGCAG 6917 Query 280 CAGTGGGGAATATT 293 ||||||||||| || Sbjct 6918 CAGTGGGGAATTTT 6931 >seq39344 Length=4166 Score = 80.6 bits (88), Expect = 8e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 1129 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 1188 Query 220 CTGA 223 |||| Sbjct 1189 CTGA 1192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1488225533184