Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq548723 116 9e-24 seq307524 77.0 8e-12 seq34712 77.0 8e-12 >seq548723 Length=4606 Score = 116 bits (128), Expect = 9e-24 Identities = 86/99 (87%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 3007 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACG-GGGGGGCA 2949 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGG 100 || ||| | |||||| ||||||||||||||| |||||| Sbjct 2948 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGG 2910 >seq307524 Length=6682 Score = 77.0 bits (84), Expect = 8e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 |||||||| ||||| |||| || ||| ||| |||||||||||||||||||||||||| Sbjct 4986 TAACTGACGTTGAGGGACGAAGGCTCGGGTAGCGAACAGGATTAGATACCCTGGTAGTCC 4927 Query 322 ACGCCGTAAACGATGAATACTA 343 | || | ||| ||||| ||| Sbjct 4926 AAGCAGAAAATTCTGAATGCTA 4905 >seq34712 Length=2292 Score = 77.0 bits (84), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 270 ACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTA 329 |||||| ||||||| | |||||||| ||||||||||||| ||||| | || ||| Sbjct 2085 ACTGAGAGACGAAAGCTAGAGGAGCAAATGGGATTAGATACCCCAGTAGTTCTAGCTGTA 2144 Query 330 AACGATGAATACTAGGTGTCGGGGCGCATAA--GTGCTCCGGTGCCGCAGCAAACGCAAT 387 ||| | | |||||||| | | | ||| || | || | | ||| | ||| ||||| | Sbjct 2145 AACAACGGATACTAGGCG-CTGTGCGTATCATCCTG-TGCAGTGTTGTAGCTAACGCGTT 2202 Query 388 AAGTATTCCACCTGGGGAGT 407 ||||||||||| || ||||| Sbjct 2203 AAGTATTCCACATGAGGAGT 2222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1195668377088