Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq614569 473 2e-131 seq603134 300 3e-79 seq608558 273 4e-71 seq371368 244 2e-62 seq85859 201 2e-49 >seq614569 Length=4450 Score = 473 bits (524), Expect = 2e-131 Identities = 291/309 (94%), Gaps = 1/309 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 178 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCTGGTCGCCGGCTTCTTAG 237 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 297 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 298 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTTCT-TCCTTGTTCG 356 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 AAAGATCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 416 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||| Sbjct 417 CTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATTACGTCCCTG 476 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 477 CCCTTTGTA 485 >seq603134 Length=1696 Score = 300 bits (332), Expect = 3e-79 Identities = 227/264 (86%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||| | Sbjct 659 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAAG 601 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| Sbjct 600 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCACTACACTGATGTAATCAACGAGT 541 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 540 CTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 482 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 481 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 422 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 421 TTGACTACGTCCCTGCCCTTTGTA 398 >seq608558 Length=4881 Score = 273 bits (302), Expect = 4e-71 Identities = 215/254 (85%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| ||||||||||| |||||| | ||| | ||| | |||||||||||||||||||| | Sbjct 2435 GCCAGCTTCTTAGAGTGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAAG 2493 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| Sbjct 2494 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCACTACACTGATGTAATCAACGAGT 2553 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| ||| | ||||||||| | ||| | ||||| |||||||||| Sbjct 2554 CTATAGCCTTGGCCGACAGGCTTCGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 2612 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 2613 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 2672 Query 305 TTGATTACGTCCCT 318 |||| ||||||||| Sbjct 2673 TTGACTACGTCCCT 2686 >seq371368 Length=682 Score = 244 bits (270), Expect = 2e-62 Identities = 193/228 (85%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||| |||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 86 GGAAATTTGAGACAATAACAGGTTTGTGATGCCCTTAGATGTTCTGG-CCGCACGCGCGC 144 Query 163 --TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220 |||||| | | |||||||| || ||||||||| | | | |||||||||| | Sbjct 145 GCTACACTAATGTATTCAACGAGTCTATAGCCTTGGCCGACATGCCCGGGTAATCTT-TG 203 Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 ||| | ||||| |||||||||| |||||||||| ||| ||||||||||||||| |||| Sbjct 204 AAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTA 263 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct 264 GTAAGCGTGTGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 311 >seq85859 Length=662 Score = 201 bits (222), Expect = 2e-49 Identities = 203/258 (79%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||||| ||||| || | ||||| |||||||||||||||| Sbjct 168 CTTCTTAGAGGGACAAACGGCTTTTAGCCGTACGA-GATTGAG-CAATAACAGGTCTGTG 225 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| ||||||||||||||||||||| || | | || || || | || Sbjct 226 ATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACAATGGAGGTGTCAGCGTGT-CTTCC 284 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| ||| |||||| | | |||| | ||||||| ||||| | | ||| Sbjct 285 C--TGGCCGAGAGGCTCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGTGGCTTG 342 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| || | | | |||||||||| || ||||| ||||||||| ||||||| |||||| Sbjct 343 AAATTGTTCCACATGAACGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 402 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 403 ACGTCCCTGCCCTTTGTA 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941270850048