Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq542339 89.7 9e-16 seq511025 84.2 4e-14 >seq542339 Length=6270 Score = 89.7 bits (98), Expect = 9e-16 Identities = 164/236 (69%), Gaps = 11/236 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| | || | ||| |||| Sbjct 3184 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCTATGAAATGCTTCGGG 3243 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | ||| || ||||| |||||| || |||| ||| | Sbjct 3244 GAGTT-GAAAATAAGCGTAGATTCGGAGATTCCCGAATAGGTTAACC------TTTCGAA 3296 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||| ||| ||| || | | || || ||| |||||||||||||||| | | Sbjct 3297 C--TGC-TGCTTAATCCATGGGCAGGAAAGAGACAACCTAGCGAACTGAAACATCTTATT 3353 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||| ||||||||||| || | ||||| ||||| ||||||||||||||| Sbjct 3354 AGCCAGAGGAAAAGAAAGTAAAAGCAGTTCCCGTAGTAGCCGCGAGCGAAATGGGA 3409 >seq511025 Length=7160 Score = 84.2 bits (92), Expect = 4e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| | ||||| ||||||||||| ||| | | ||||| ||||| Sbjct 7094 GCGAACTGAAACATCTTATTAGCTAGAGGAAAAGAAAGCAAAAGCGGTTCCCGTAGTAGC 7035 Query 229 GGCGAGCGAAATGGGA 244 |||||||||||||||| Sbjct 7034 GGCGAGCGAAATGGGA 7019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 912651128256