Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq548723 95.1 3e-17 seq19004 86.0 1e-14 seq55106 82.4 2e-13 >seq548723 Length=4606 Score = 95.1 bits (104), Expect = 3e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 3056 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 3115 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211 |||||||| ||||| ||||| || |||||||||||| ||| ||||| Sbjct 3116 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGG 3162 >seq19004 Length=6934 Score = 86.0 bits (94), Expect = 1e-14 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 154 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 213 || ||||| ||||||||||||| |||||||| ||| |||||||||||| ||| ||||| Sbjct 6931 AAAATTCCCCACTGCTGCCTCCTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCT 6872 Query 214 GACCTTCCTCTCAGA 228 || | |||||||||| Sbjct 6871 GATCATCCTCTCAGA 6857 >seq55106 Length=6954 Score = 82.4 bits (90), Expect = 2e-13 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 91 TACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTG 150 ||| | |||||| ||||| ||| || || | | ||| | || | ||| |||||| Sbjct 3176 TACGACCCGTAGG-CCTTCTACCTCCAAGCGGCATTGCTCCGTTAGGATTTCGCCCATTG 3234 Query 151 ACCAATATTCCTCAC-TGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGT 209 || ||||| | | ||||||||||||||||||| ||| |||||||| ||||||| ||| Sbjct 3235 CGGAAAATTCCCCCCATGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTTAGTTCCAGTGT 3294 Query 210 GGGGGACCTTCCTCTCAGA 228 || || | ||||||| || Sbjct 3295 GGTTGATCATCCTCTCGGA 3313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062109675392