Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq614569 309 5e-82 seq50258 98.7 2e-18 >seq614569 Length=4450 Score = 309 bits (342), Expect = 5e-82 Identities = 239/279 (86%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 4122 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 4179 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4180 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 4239 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||||| || |||| |||| ||||||||||||||||||||||||| ||| ||||| ||| Sbjct 4240 GAACGCGGCGATTTCCTCCCACACATCGTAGTCGGATACGAATAGGCCTTTGGCCCTGAA 4299 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 |||||| || ||||||| | | | |||| | | |||| |||| || |||| Sbjct 4300 TCTTAGCTGGTTAGCAACGGCGCTGCAGGAGAAGTCTGTAGTGCTC-GCTGACGTCTTGC 4358 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||| |||||||| |||||||| |||||||| ||||| Sbjct 4359 AATTTTACCATGCGTGGGGATAAAACCTTTGCATACGAC 4397 >seq50258 Length=3556 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| |||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 620 GTACGAGAGTTACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 677 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 678 GGCGCGAAGCTACCCTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 737 Query 121 GAA 123 ||| Sbjct 738 GAA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 814232333824