Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq620679 174 1e-38 >seq620679 Length=2600 Score = 174 bits (192), Expect = 1e-38 Identities = 579/882 (66%), Gaps = 34/882 (4%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || |||| ||| || ||| |||||||| ||||| || || || |||| Sbjct 2326 TGTTCCCGATTCAGTACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCT 2267 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||||||||| | | ||||| | ||||||| || | || Sbjct 2266 GGACCGCCGAGGAGGTCGATCTCGACCAAGACCAGCGCCACTGGGAAACCCTAACCCCCG 2207 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || | || ||||| | || || | || ||||| ||||| || ||||| |||||| Sbjct 2206 GCGAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCC 2147 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | | | ||| | ||||||| || || |||||||||||| |||| Sbjct 2146 TCGAGAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCT 2087 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 ||||||||||||| || || ||||| ||||||| ||||||||||| | ||| |||| | Sbjct 2086 ACGGCTTCCAGATCGCGATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGA 2027 Query 61364 CGTACATCAGGGAGCGGGCGGAACGTGAA----CGATTGTTCAATGCCATCGAGACGATA 61419 | ||||||| || || ||| ||| || | || ||| |||| || || Sbjct 2026 CCTACATCAAAGACTCGG----ACGAGAAATCCCGTCTCTTTCGGGCCGTCGACACCATC 1971 Query 61420 CCGGCGGTGAAGCGGAAA--GCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477 || | | ||| ||| ||| | |||||| | || |||||| | | ||| | Sbjct 1970 CC--TTGCGTCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGG---CTCGGAGA 1916 Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCG 61536 | || | || ||| | |||| || || || || || | || ||| | ||| | Sbjct 1915 CTTTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCT 1856 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 | || ||| || |||||| | || || || || | ||||| |||||||||||| || Sbjct 1855 TCTG-CGCGATATTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAAC 1797 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACG 61655 |||||||| || || || || ||| | || || || || || || || || | | | Sbjct 1796 GAGTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCTT-CTCTACTCCCT 1738 Query 61656 CTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG-GGTGAGATTGTTCGTGAGGCGGTAA 61714 | | | |||| | || | |||||||| ||| || | || || || | ||||| Sbjct 1737 CCTCCGGATGAAGC-TC--ACCGAGGAGCGCGTGAAGTCA-ATCGTGCGGAACGCGGTTG 1682 Query 61715 CTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTG 61772 || || ||| || |||| ||||| || || | | | | || ||||| | Sbjct 1681 ACATAGAGAGGGAGTTCGTCTG--CGACGCGTTACCGTGCGCCTTAGTTGGGATGAACGG 1624 Query 61773 TGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG-TTGGTCGATTTGGGTA 61831 || || ||| ||||| || || || || || || | ||| | ||| || ||||| Sbjct 1623 TGATCTGATGGGTCAGTACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGGTA 1564 Query 61832 T--GAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGA 61889 | ||||| | ||| || | | ||||||||||||| ||||| ||||| || | Sbjct 1563 TGGGAAGC---TGTATGATGTGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCA 1507 Query 61890 TGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || ||||| ||||| || ||||| | || || || || || Sbjct 1506 GGGGAAGACCAATTTCTTTGAGAAGAGAGTTGGGGAGTACCA 1465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394534969382240