Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq39735 271 8e-68 seq32757 168 7e-37 seq439774 96.9 4e-15 >seq39735 Length=4112 Score = 271 bits (300), Expect = 8e-68 Identities = 267/345 (77%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 160193 TACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGT 160252 || || ||||| || || |||||| ||||| | ||| | ||||||| | ||||| || Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 160253 TCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTC 160312 || || || | ||||||||| || |||||||||||||| |||| ||| |||||||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 160313 CAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTC 160372 ||||| || ||||| ||||||||||| || || |||||||| ||||| ||||| ||||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 160373 GGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAG 160432 || || || || ||| |||||||||||| ||| |||| || |||||| | |||| || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 160433 ACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTAC 160492 || ||||||| ||| || || | ||||||| ||||||||||||||||| || || Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 160493 AACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAA 160537 || ||||| || || ||||| || || || || |||||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 168 bits (186), Expect = 7e-37 Identities = 228/318 (72%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 159905 GCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCA 159964 || ||||| ||||| || || || || || ||||| || |||||||| || |||| || Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769 Query 159965 CTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGT 160024 | | ||||| ||||| || || || ||||| || | || |||| || || ||| Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829 Query 160025 CTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGT 160084 | ||||| || || || |||||||| || || | || || ||| | || |||||||| Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889 Query 160085 CCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAG 160144 |||| | || | || | |||||| | | || | | |||||||||||||||| Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAG 3949 Query 160145 TGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCA 160204 |||||||| || |||||| |||||||| || ||||| ||||||||| || ||||| Sbjct 3950 TGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCT 4009 Query 160205 GTCGCTGCTGCTTCTGCT 160222 || || |||||| ||||| Sbjct 4010 GTTGCAGCTGCTACTGCT 4027 >seq439774 Length=2317 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 160975 CTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGC 161034 || ||||| || || || |||||| | ||| || ||||||||||| || ||| | ||| Sbjct 1379 CTCGACGCCGCCGAGGAGGCAGGTCTCGACCTCCCTTACTCCTGTCGCGCCGGTTCCTGC 1438 Query 161035 TCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCA-ATCTTTCCT 161093 ||| | || || || ||| ||| ||| || || || || ||||| || | |||| || Sbjct 1439 TCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGCTTT-CT 1497 Query 161094 GGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGA 161153 |||||||| || |||| || |||||||| || || || || ||||| | ||||| Sbjct 1498 TGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCGCCTATCCTTCCTCTGA 1557 Query 161154 TGTAACTATT 161163 ||| ||| || Sbjct 1558 TGTTACTCTT 1567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547061717134800