Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 271 8e-68
seq32757 168 7e-37
seq439774 96.9 4e-15
>seq39735
Length=4112
Score = 271 bits (300), Expect = 8e-68
Identities = 267/345 (77%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 160193 TACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGT 160252
|| || ||||| || || |||||| ||||| | ||| | ||||||| | ||||| ||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 160253 TCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTC 160312
|| || || | ||||||||| || |||||||||||||| |||| ||| ||||||||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 160313 CAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTC 160372
||||| || ||||| ||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 160373 GGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAG 160432
|| || || || ||| |||||||||||| ||| |||| || |||||| | |||| ||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 160433 ACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTAC 160492
|| ||||||| ||| || || | ||||||| ||||||||||||||||| || ||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 160493 AACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAA 160537
|| ||||| || || ||||| || || || || ||||||||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 168 bits (186), Expect = 7e-37
Identities = 228/318 (72%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 159905 GCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCA 159964
|| ||||| ||||| || || || || || ||||| || |||||||| || |||| ||
Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769
Query 159965 CTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGT 160024
| | ||||| ||||| || || || ||||| || | || |||| || || |||
Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829
Query 160025 CTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGT 160084
| ||||| || || || |||||||| || || | || || ||| | || ||||||||
Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889
Query 160085 CCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAG 160144
|||| | || | || | |||||| | | || | | ||||||||||||||||
Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAG 3949
Query 160145 TGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCA 160204
|||||||| || |||||| |||||||| || ||||| ||||||||| || |||||
Sbjct 3950 TGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCT 4009
Query 160205 GTCGCTGCTGCTTCTGCT 160222
|| || |||||| |||||
Sbjct 4010 GTTGCAGCTGCTACTGCT 4027
>seq439774
Length=2317
Score = 96.9 bits (106), Expect = 4e-15
Identities = 137/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 160975 CTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGC 161034
|| ||||| || || || |||||| | ||| || ||||||||||| || ||| | |||
Sbjct 1379 CTCGACGCCGCCGAGGAGGCAGGTCTCGACCTCCCTTACTCCTGTCGCGCCGGTTCCTGC 1438
Query 161035 TCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCA-ATCTTTCCT 161093
||| | || || || ||| ||| ||| || || || || ||||| || | |||| ||
Sbjct 1439 TCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGCTTT-CT 1497
Query 161094 GGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGA 161153
|||||||| || |||| || |||||||| || || || || ||||| | |||||
Sbjct 1498 TGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCGCCTATCCTTCCTCTGA 1557
Query 161154 TGTAACTATT 161163
||| ||| ||
Sbjct 1558 TGTTACTCTT 1567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547061717134800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |