Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq39735 212 8e-50 seq32757 172 7e-38 >seq39735 Length=4112 Score = 212 bits (234), Expect = 8e-50 Identities = 254/345 (74%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 189241 TACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGT 189300 || || || ||||||||||| || | || | || || |||| || |||||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 189301 TCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTC 189360 || ||||||| ||||| | || ||| ||| || ||||||| |||| |||| ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 189361 CAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTC 189420 ||||| |||||||||||||| |||||||| || |||||||| || || || ||||| || Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 189421 GGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAA 189480 || ||||| || ||| || ||||||||||| | || |||||| || | | ||| Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 189481 ACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTAC 189540 ||||| |||| || || || | ||||||| || || ||||| |||||||| || Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 189541 AACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAA 189585 || ||||| || |||||||| || || || || | ||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 172 bits (190), Expect = 7e-38 Identities = 225/306 (74%), Gaps = 8/306 (3%) Strand=Plus/Plus Query 188962 GCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTAT 189021 |||||||| || ||||| |||||||| || || ||||| || |||| || | | || Sbjct 3719 GCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTAC 3778 Query 189022 GGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTC 189081 |||||||| || || || ||||| || ||||| | || || || ||| | ||||| Sbjct 3779 GGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTT 3838 Query 189082 TACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAA 189141 ||||| || |||||||| || || | ||||| ||| | ||||||||||| |||| | Sbjct 3839 TACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAG 3898 Query 189142 CTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC---CTACATGGGTCGTGAGTGGGAA 189198 || | || | |||||| | | || | || || ||| |||||||||||||||||| Sbjct 3899 CTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGCTATATGGGTCGTGAGTGGGAA 3955 Query 189199 CTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGC 189257 || || |||||| |||||||| |||||||| ||| |||| || || || |||||||| Sbjct 3956 CTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGC 4014 Query 189258 AGCAGC 189263 ||| || Sbjct 4015 AGCTGC 4020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629118593484000