Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_031906.1
Length=198190
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 212 8e-50
seq32757 172 7e-38
>seq39735
Length=4112
Score = 212 bits (234), Expect = 8e-50
Identities = 254/345 (74%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 189241 TACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGT 189300
|| || || ||||||||||| || | || | || || |||| || ||||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 189301 TCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTC 189360
|| ||||||| ||||| | || ||| ||| || ||||||| |||| |||| |||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 189361 CAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTC 189420
||||| |||||||||||||| |||||||| || |||||||| || || || ||||| ||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 189421 GGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAA 189480
|| ||||| || ||| || ||||||||||| | || |||||| || | | |||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 189481 ACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTAC 189540
||||| |||| || || || | ||||||| || || ||||| |||||||| ||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 189541 AACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAA 189585
|| ||||| || |||||||| || || || || | |||||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 172 bits (190), Expect = 7e-38
Identities = 225/306 (74%), Gaps = 8/306 (3%)
Strand=Plus/Plus
Query 188962 GCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTAT 189021
|||||||| || ||||| |||||||| || || ||||| || |||| || | | ||
Sbjct 3719 GCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTAC 3778
Query 189022 GGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTC 189081
|||||||| || || || ||||| || ||||| | || || || ||| | |||||
Sbjct 3779 GGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTT 3838
Query 189082 TACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAA 189141
||||| || |||||||| || || | ||||| ||| | ||||||||||| |||| |
Sbjct 3839 TACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAG 3898
Query 189142 CTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC---CTACATGGGTCGTGAGTGGGAA 189198
|| | || | |||||| | | || | || || ||| ||||||||||||||||||
Sbjct 3899 CTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGCTATATGGGTCGTGAGTGGGAA 3955
Query 189199 CTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGC 189257
|| || |||||| |||||||| |||||||| ||| |||| || || || ||||||||
Sbjct 3956 CTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGC 4014
Query 189258 AGCAGC 189263
||| ||
Sbjct 4015 AGCTGC 4020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629118593484000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |