Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20]
89,515 sequences; 867,455,155 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq18261 188 4e-46
seq41062 125 4e-27
seq36371 125 4e-27
seq10520 125 4e-27
seq7968 125 4e-27
seq1811 125 4e-27
seq1593 125 4e-27
seq1806 122 5e-26
seq881 111 9e-23
seq58542 93.3 2e-17
seq30205 71.6 8e-11
>seq18261
Length=6344
Score = 188 bits (208), Expect = 4e-46
Identities = 112/117 (96%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 3019 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAGAAAAAGAACATCGCCC 2960
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2959 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 2903
>seq41062
Length=6695
Score = 125 bits (138), Expect = 4e-27
Identities = 98/117 (84%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| | |||||| ||
Sbjct 189 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 130
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 129 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 73
>seq36371
Length=6466
Score = 125 bits (138), Expect = 4e-27
Identities = 98/117 (84%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| | |||||| ||
Sbjct 6241 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 6300
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 6301 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 6357
>seq10520
Length=91749
Score = 125 bits (138), Expect = 4e-27
Identities = 98/117 (84%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| | |||||| ||
Sbjct 89322 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 89263
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 89262 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 89206
>seq7968
Length=42325
Score = 125 bits (138), Expect = 4e-27
Identities = 98/117 (84%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| | |||||| ||
Sbjct 35123 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 35064
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 35063 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 35007
>seq1811
Length=159848
Score = 125 bits (138), Expect = 4e-27
Identities = 98/117 (84%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| | |||||| ||
Sbjct 6065 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 6124
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 6125 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 6181
>seq1593
Length=76168
Score = 125 bits (138), Expect = 4e-27
Identities = 98/117 (84%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| | |||||| ||
Sbjct 40371 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 40430
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 40431 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 40487
>seq1806
Length=205190
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| | | |||||| ||
Sbjct 113848 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAACAACATCCGCC 113789
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| |||| |||||||| ||||||||
Sbjct 113788 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGATATCTGATTGTCTTCGA 113732
>seq881
Length=193844
Score = 111 bits (122), Expect = 9e-23
Identities = 94/116 (81%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
|| ||||| ||||||||||||| ||||||||||| ||||| | |||||| ||
Sbjct 148926 AATCCAAAAACTTTGATTTCTCATAAGGTGCCGACGGAGTCCTATAAGCAACATCCGTCG 148985
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| || ||||| ||||| |||| |||||| |||| |||||||||||||||||
Sbjct 148986 ATCCCTGGTTGGCATTGTTTATGGTTGAGACTAGGACGATATCTGATCGTCTTCGA 149041
>seq58542
Length=6864
Score = 93.3 bits (102), Expect = 2e-17
Identities = 89/110 (81%), Gaps = 3/110 (3%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGC-C 59
||||||||| ||||||||||||| |||||||||| ||||| | |||||| | |
Sbjct 110 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCCGC 51
Query 60 CGATCCCTAGTCGGCATAGTTT-ACGGTT-AAGACTACGACGGTATCTGA 107
|||||||| |||||||| |||| | |||| | ||||| ||||||||||||
Sbjct 50 CGATCCCTGGTCGGCATCGTTTCATGGTTGACGACTAGGACGGTATCTGA 1
>seq30205
Length=1416
Score = 71.6 bits (78), Expect = 8e-11
Identities = 85/112 (76%), Gaps = 4/112 (4%)
Strand=Plus/Plus
Query 6 CAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG--TCAAAATGATAACATCGCCCGAT 63
|||| ||||||||||||| ||||||| || ||| | || | | | ||||| |||
Sbjct 956 CAAAAACTTTGATTTCTCATAAGGTGACG-GCGGGGTTCTATAAG-CAACATTCGTTGAT 1013
Query 64 CCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
|| | || ||||| |||||||||| ||| || || ||||| ||||| |||||
Sbjct 1014 CCTTGGTTGGCATTGTTTACGGTTGAGATTAGGATGGTATTTGATCATCTTC 1065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278166365850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |