Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq18261 188 4e-46 seq41062 125 4e-27 seq36371 125 4e-27 seq10520 125 4e-27 seq7968 125 4e-27 seq1811 125 4e-27 seq1593 125 4e-27 seq1806 122 5e-26 seq881 111 9e-23 seq58542 93.3 2e-17 seq30205 71.6 8e-11 >seq18261 Length=6344 Score = 188 bits (208), Expect = 4e-46 Identities = 112/117 (96%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||||||||||||||||||||||| || | |||||||||| Sbjct 3019 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAGAAAAAGAACATCGCCC 2960 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2959 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 2903 >seq41062 Length=6695 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| | |||||| || Sbjct 189 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 130 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 129 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 73 >seq36371 Length=6466 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| | |||||| || Sbjct 6241 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 6300 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 6301 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 6357 >seq10520 Length=91749 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| | |||||| || Sbjct 89322 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 89263 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 89262 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 89206 >seq7968 Length=42325 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| | |||||| || Sbjct 35123 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 35064 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 35063 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 35007 >seq1811 Length=159848 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| | |||||| || Sbjct 6065 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 6124 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 6125 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 6181 >seq1593 Length=76168 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| | |||||| || Sbjct 40371 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 40430 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 40431 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 40487 >seq1806 Length=205190 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| | | |||||| || Sbjct 113848 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAACAACATCCGCC 113789 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||| |||||||| |||||||| Sbjct 113788 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGATATCTGATTGTCTTCGA 113732 >seq881 Length=193844 Score = 111 bits (122), Expect = 9e-23 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 || ||||| ||||||||||||| ||||||||||| ||||| | |||||| || Sbjct 148926 AATCCAAAAACTTTGATTTCTCATAAGGTGCCGACGGAGTCCTATAAGCAACATCCGTCG 148985 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| || ||||| ||||| |||| |||||| |||| ||||||||||||||||| Sbjct 148986 ATCCCTGGTTGGCATTGTTTATGGTTGAGACTAGGACGATATCTGATCGTCTTCGA 149041 >seq58542 Length=6864 Score = 93.3 bits (102), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 3/110 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGC-C 59 ||||||||| ||||||||||||| |||||||||| ||||| | |||||| | | Sbjct 110 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCCGC 51 Query 60 CGATCCCTAGTCGGCATAGTTT-ACGGTT-AAGACTACGACGGTATCTGA 107 |||||||| |||||||| |||| | |||| | ||||| |||||||||||| Sbjct 50 CGATCCCTGGTCGGCATCGTTTCATGGTTGACGACTAGGACGGTATCTGA 1 >seq30205 Length=1416 Score = 71.6 bits (78), Expect = 8e-11 Identities = 85/112 (76%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 6 CAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG--TCAAAATGATAACATCGCCCGAT 63 |||| ||||||||||||| ||||||| || ||| | || | | | ||||| ||| Sbjct 956 CAAAAACTTTGATTTCTCATAAGGTGACG-GCGGGGTTCTATAAG-CAACATTCGTTGAT 1013 Query 64 CCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 || | || ||||| |||||||||| ||| || || ||||| ||||| ||||| Sbjct 1014 CCTTGGTTGGCATTGTTTACGGTTGAGATTAGGATGGTATTTGATCATCTTC 1065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278166365850