Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq257 408 7e-112 seq1593 318 1e-84 seq306 217 3e-54 seq2667 91.5 3e-16 seq88695 78.8 2e-12 seq69931 75.2 2e-11 seq80277 73.4 7e-11 >seq257 Length=231356 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 51621 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 51679 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 51680 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 51739 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51740 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 51799 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 51800 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 51859 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 51860 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 51912 >seq1593 Length=76168 Score = 318 bits (352), Expect = 1e-84 Identities = 183/186 (98%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 21 GGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTC 80 ||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 75245 GGGGCAA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTC 75303 Query 81 ACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAG 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75304 ACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAG 75363 Query 141 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75364 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 75423 Query 201 CCAGTT 206 |||||| Sbjct 75424 CCAGTT 75429 Score = 161 bits (178), Expect = 2e-37 Identities = 89/89 (100%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75646 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 75705 Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||| Sbjct 75706 TAGGCCACACTTTCATGGTTTGTATTCAC 75734 >seq306 Length=238140 Score = 217 bits (240), Expect = 3e-54 Identities = 148/165 (90%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 180840 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 180782 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 180781 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 180722 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 |||||||||| |||||||||||||||||||||||||||||||| Sbjct 180721 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAA 180677 >seq2667 Length=66065 Score = 91.5 bits (100), Expect = 3e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 ||||||||| |||||| |||||||||| | |||| || |||| | |||||||| || || Sbjct 28304 CCACAAGCCGGTTATCTCTGTGGTAACCTCTCTGAAACATCTAACTTCAAATTTTGAAGG 28245 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||| | || ||| || |||||| |||||| Sbjct 28244 CCTAAAGGATCGTTTGGTCACGTATTTATGGTTCGTATTC 28205 >seq88695 Length=830 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| | || ||||| | ||| Sbjct 679 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACC 620 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| |||| | | | ||| || ||||||||||||| | |||| | Sbjct 619 CTTGGGACC---TTCTCCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACGAC 563 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| |||| || ||||| | || |||| |||||||| | ||| ||||| Sbjct 562 CCCGTCGATATGGACTCTTGGGGGTCATCAGCCTGTTATCCCCGGCGTACCTTTT 508 >seq69931 Length=2101 Score = 75.2 bits (82), Expect = 2e-11 Identities = 126/181 (70%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||||| |||| | |||||||||||||||| || ||| || ||||| Sbjct 877 ACCAAACTGTCTCACGACGTTTTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGC 818 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 | || ||| |||| | | || | | |||| || ||||||||||||| | || Sbjct 817 CATACCCTTGGGACCGGCTACAGCCCCAGGATGA---GATGAGCCGACATCGAGGTGCCA 761 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || | | ||||| ||||||| ||||| | | |||| |||||||| ||| |||| Sbjct 760 AACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCAGAGTACCTTT 701 Query 224 T 224 | Sbjct 700 T 700 >seq80277 Length=8453 Score = 73.4 bits (80), Expect = 7e-11 Identities = 112/160 (70%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 |||| | || || | ||| ||||| ||||||||| || ||| ||||||| ||| || | Sbjct 962 TGATGGAAAAAGTCAACAACGAAGAATCAAAAAGTAATTTCGTTATGAACACTTAGCCGT 903 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA 254 |||| || |||| | ||||||||||| ||| | || ||||||| || | Sbjct 902 TGCAAGTCAATTATTTTCGAGGTAACTTTTCCAACACTTATAATTTCAAATTCTGAAGAT 843 Query 255 CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||||| | || || |||| || ||| |||| || Sbjct 842 CTAAAGGATAGTAGGGTCATGCTTTTATAGTTCGTATACA 803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853635183840