Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq18261 187 3e-45 seq10520 75.2 1e-11 seq7968 75.2 1e-11 seq1811 75.2 1e-11 seq1593 75.2 1e-11 >seq18261 Length=6344 Score = 187 bits (206), Expect = 3e-45 Identities = 175/215 (81%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 2758 CTAGAAACCAACAAAATAGGACCGCACGTCCTATTCTATTATTCCATGCTAACGTATTCG 2699 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||| ||||||||||||||||| | || Sbjct 2698 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCAACA 2639 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGC-AGTACTCGC 182 || ||| |||| ||||| || || ||| ||| | ||| || | ||||| ||| Sbjct 2638 CACCCAGTGAAGGGCAT-GAGGTTCTCCAGAAGGAAAGGCCCGGCCGGACAAGTACACGC 2580 Query 183 CGTGAGGCGGACCATAGCACCCA-GCCCGAGTTTC 216 |||||||||||| | || ||| |||| |||||| Sbjct 2579 GGTGAGGCGGACC-TGCCAGCCAGGCCCAAGTTTC 2546 >seq10520 Length=91749 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 89055 CCAACGTAATAGGACCGAAA-TCCTATAATGTTATCCCATGCTAATGTATCCAGAGCGTA 88997 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 88996 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 88959 >seq7968 Length=42325 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 34856 CCAACGTAATAGGACCGAAA-TCCTATAATGTTATCCCATGCTAATGTATCCAGAGCGTA 34798 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 34797 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 34760 >seq1811 Length=159848 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 6332 CCAACGTAATAGGACCGAAA-TCCTATAATGTTATCCCATGCTAATGTATCCAGAGCGTA 6390 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 6391 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 6428 >seq1593 Length=76168 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 40638 CCAACGTAATAGGACCGAAA-TCCTATAATGTTATCCCATGCTAATGTATCCAGAGCGTA 40696 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 40697 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 40734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594683856510