Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq26855 132 4e-29 seq29172 131 1e-28 seq89515 127 2e-27 seq440 127 2e-27 seq89489 123 2e-26 seq5 118 9e-25 seq5447 73.4 3e-11 >seq26855 Length=3797 Score = 132 bits (146), Expect = 4e-29 Identities = 123/151 (81%), Gaps = 5/151 (3%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||| | ||||||| ||| || || |||| ||||||||||| | |||||| Sbjct 3614 CGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTGGGGATTAGCTCACTCTCGCG 3557 Query 61 GGTTGGCGGCCCTCTGTATGTACC-ATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 |||||| |||| |||| || |||||| ||||||| ||||| ||| |||||||| Sbjct 3556 AGTTGGCTGCCCACTGTCACCGCCGATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCC 3497 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTC 150 ||||||||||||||||||||||| ||||||| Sbjct 3496 ATGAGGACTTGACGTCATCCCCA-CTTCCTC 3467 >seq29172 Length=4153 Score = 131 bits (144), Expect = 1e-28 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| ||||||| ||| || |||| ||||||| ||||| |||| || Sbjct 3246 TCGAGTTGCAGACCCCAATCCGAACTGAGACCGGCTTTTTGGGATTCGCTCCACCTCACG 3305 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||||| |||| |||||||| | || || ||||||| |||||||| || Sbjct 3306 GTATCGCAGCCCTTTGTACCGGCCATTGTAGCATGTTTGCAGCCCTAGACATAAGGGGCA 3365 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| || ||||||||||||||||||||||||| Sbjct 3366 TGATGATTTGACGTCATCCCCACCTTCCTCCG 3397 >seq89515 Length=155578 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 103617 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 103558 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 103557 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 103498 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 103497 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 103458 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 138259 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 138318 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 138319 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 138378 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 138379 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 138418 >seq440 Length=210348 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 12523 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 12582 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 12583 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 12642 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 12643 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 12682 >seq89489 Length=184534 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 133565 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 133623 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 133624 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 133683 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 133684 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 133723 >seq5 Length=498844 Score = 118 bits (130), Expect = 9e-25 Identities = 121/157 (77%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 5 GTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTT 64 |||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | | Sbjct 4579 GTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAGCCT 4637 Query 65 GGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAG 124 || ||| |||| | |||||||| ||||||| |||| ||||||||||||||| | Sbjct 4638 TGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCG 4697 Query 125 GACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||| || | |||| Sbjct 4698 GACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 4734 >seq5447 Length=57959 Score = 73.4 bits (80), Expect = 3e-11 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| |||||| | ||||| ||||||||||||||| || Sbjct 23064 CCATTGTAGCACGTGTGTCGCCCAGGGCATAAGAGGCATGATGACTTGACGTCATCCTCA 23005 Query 143 CCTTCCTCCG 152 |||||||||| Sbjct 23004 CCTTCCTCCG 22995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415639254550