Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq69931 176 3e-42 seq88695 118 7e-25 seq16560 107 1e-21 seq89515 87.8 1e-15 seq151 75.2 8e-12 seq13957 71.6 1e-10 >seq69931 Length=2101 Score = 176 bits (194), Expect = 3e-42 Identities = 123/140 (88%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||| Sbjct 707 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTG 648 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 ||||||||||||||| | |||| ||||||| | |||||| ||| |||||||||||||| Sbjct 647 CTTTCGCATCTGCTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 588 Query 121 CACTACGATTTCCGACCGTA 140 | ||||| |||||||||| Sbjct 587 CGTCACGATGTCCGACCGTA 568 >seq88695 Length=830 Score = 118 bits (130), Expect = 7e-25 Identities = 111/139 (80%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct 515 TACCTTTTATCCGTTGAGCGATGGCCCACCCACGCGGGACCACCGGATCACTATGACCGA 456 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | ||| ||||||| ||| ||| ||| |||||||||||| Sbjct 455 CTTTCGTCTCTGCTCGACATGTCCGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCA 396 Query 121 CACTAC-GATTTCCGACCG 138 || || |||||||||||| Sbjct 395 -ACGACCGATTTCCGACCG 378 >seq16560 Length=1890 Score = 107 bits (118), Expect = 1e-21 Identities = 109/140 (78%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1791 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACC-G 1733 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||| ||||||| | |||| ||||||| ||| || ||| |||||||||||| | Sbjct 1732 ACTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCT 1673 Query 121 CACTA--CGATTTCCGACCG 138 | | || ||||| |||| Sbjct 1672 GAACAGCCGGTTTCCAACCG 1653 >seq89515 Length=155578 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | || Sbjct 108708 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 108649 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 108648 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 108591 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | || Sbjct 133168 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 133227 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 133228 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 133285 >seq151 Length=317149 Score = 75.2 bits (82), Expect = 8e-12 Identities = 87/116 (75%), Gaps = 5/116 (4%) Strand=Plus/Plus Query 5 TTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCAC--CGGATCACTATGACCTGCT 62 ||||||||||||||||||| || ||||| || | ||| || ||||||| |||| || Sbjct 317023 TTTTATCCGTTGAGCGATGACCTTTCCACTC---GACACGTCGTATCACTAAGACCGACT 317079 Query 63 TTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||| ||| || | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 317080 TTCGTCCCTGTTCGACGGGTAGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 317135 >seq13957 Length=529 Score = 71.6 bits (78), Expect = 1e-10 Identities = 90/121 (74%), Gaps = 6/121 (5%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCC---ACCGGATCACTATGAC 57 ||||||||||||||||||||| | |||||| ||| ||| |||| |||||| | Sbjct 502 TACCTTTTATCCGTTGAGCGACACCGCTTCCA--CAT-GCCGGTGCCGGGTCACTAGTCC 446 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||||| |||||| | || | |||| || |||||| | ||| ||| |||||| Sbjct 445 CAGCTTTCGCTCCTGCTCGACCCGTCGGTCTCACAGTCAAGCTCCCTTGTGCACTTGCAC 386 Query 118 T 118 | Sbjct 385 T 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351704600500