Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20]
89,515 sequences; 867,455,155 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq69931 201 1e-49
seq88695 129 6e-28
seq16560 116 4e-24
seq89489 75.2 1e-11
seq3677 75.2 1e-11
seq3354 75.2 1e-11
seq1235 75.2 1e-11
seq403 75.2 1e-11
>seq69931
Length=2101
Score = 201 bits (222), Expect = 1e-49
Identities = 138/156 (88%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||
Sbjct 695 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTGCTTTCGCATCTG 636
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| |||| ||||||||| |||| |||||||||||||||||| | ||||||||||
Sbjct 635 CTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATCGTCACGATGTC 576
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||||| | |||| ||||||| |||||||||||
Sbjct 575 CGACCGTAACTAGCGTACCTTCGAACTCCTCCGTTA 540
>seq88695
Length=830
Score = 129 bits (142), Expect = 6e-28
Identities = 122/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||| ||| | | |||||||||||||||||||| |||||| |||
Sbjct 503 GTTGAGCGATGGCCCACCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 444
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| ||| ||||||||||| || ||||||||||||||||| | | |||| ||
Sbjct 443 CTCGACATGTCCGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAACGACCGATTTC 384
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|||||| | ||| ||||||| | |||||||||
Sbjct 383 CGACCGGTCTGAGCCTACCTTCGCACGCCTCCGTTA 348
>seq16560
Length=1890
Score = 116 bits (128), Expect = 4e-24
Identities = 123/159 (77%), Gaps = 5/159 (3%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | |||||||||||||||||||| | |||| |||
Sbjct 1779 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACC-GACTTCGTCTCTG 1721
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT---AACCTCACGAT 140
||||| |||| ||||||||||| || ||||||||||||||||| ||| | || |
Sbjct 1720 CTCGACTTGTCAGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCTGAACAGC-CGGT 1662
Query 141 GTCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||| |||| | ||| ||| ||| || |||||||||
Sbjct 1661 TTCCAACCGGCCTGAGCCAACCATCGCGCGCCTCCGTTA 1623
>seq89489
Length=184534
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 78707 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 78648
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 78647 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 78599
>seq3677
Length=63360
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 16718 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 16777
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 16778 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 16826
>seq3354
Length=110323
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 37796 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 37737
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 37736 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 37688
>seq1235
Length=88152
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 64606 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 64547
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 64546 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 64498
>seq403
Length=169495
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 21513 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 21454
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 21453 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 21405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473189305180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |