Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq29172 143 5e-32 seq89515 138 2e-30 seq88846 114 2e-23 seq903 105 1e-20 seq26855 102 1e-19 seq6047 86.0 1e-14 seq1308 80.6 5e-13 seq89489 77.0 6e-12 seq3677 77.0 6e-12 seq3354 77.0 6e-12 seq403 77.0 6e-12 seq3494 75.2 2e-11 >seq29172 Length=4153 Score = 143 bits (158), Expect = 5e-32 Identities = 191/262 (73%), Gaps = 14/262 (5%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||||||||||||||||||||| | || ||||||||||||| | || ||||| | Sbjct 2652 AGTGCACATGGTGGATGCCTTGGCATCGAGAGCCGATGAAGGACGTTGGAGTCTGCGAAA 2593 Query 61 AGCTGCGGGGAG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 ||| |||| || ||| ||| | || ||||||| ||| ||||||||||||||||| Sbjct 2592 AGCCCCGGGAAGGTGA-CAACCGACCTGTGATCCGGGGATGTCCGAATGGGGAAACCC-- 2536 Query 120 CCCTTTGGGTCATTGCATG---------CTGAATACATAGGTATGCA-AAGCGAACGCGG 169 ||| | | | || | ||||| ||||||| | | || ||||| || Sbjct 2535 ACCTGGAGTAAAGTCCAGGTACCTCTGTCTGAACACATAGGGCAGTAGGAGGGAACGTGG 2476 Query 170 CGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTG 229 ||| |||||||||| |||| | |||||| ||||| |||| | |||||| ||||||| Sbjct 2475 GGAAGTGAAACATCTCAGTACCCACAGGAAGAGAAAACAACAGTGATTCCGGTAGTAGTG 2416 Query 230 GCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| ||| || Sbjct 2415 GCGAGCGAAACTGGAAGAGGCT 2394 >seq89515 Length=155578 Score = 138 bits (152), Expect = 2e-30 Identities = 179/243 (74%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 106272 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAATCGACGAAATGCTTCGGG 106331 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| ||| |||| ||| | Sbjct 106332 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGGCAACC------TTTCGAA 106384 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 106385 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 106441 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 106442 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 106501 Query 249 CCT 251 ||| Sbjct 106502 CCT 106504 Score = 138 bits (152), Expect = 2e-30 Identities = 179/243 (74%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 135604 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAATCGACGAAATGCTTCGGG 135545 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| ||| |||| ||| | Sbjct 135544 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGGCAACC------TTTCGAA 135492 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 135491 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 135435 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 135434 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 135375 Query 249 CCT 251 ||| Sbjct 135374 CCT 135372 >seq88846 Length=528 Score = 114 bits (126), Expect = 2e-23 Identities = 92/110 (84%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG-- 68 |||||||||||||| ||||||||||||||||||| | | ||||||||||||||| Sbjct 369 GTGGATGCCTTGGCATGTACAGGCGATGAAGGACGTGGCACGCTGCGATAAGCTGCGGTG 428 Query 69 -GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 || |||||||| |||||| |||||||||||||||||||||||||| Sbjct 429 AGGTGTGAGCAA----CCTTTGACCCGCAGATTTCCGAATGGGGAAACCC 474 >seq903 Length=237473 Score = 105 bits (116), Expect = 1e-20 Identities = 94/115 (82%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| || ||| |||||||||||||||||| |||||| | Sbjct 1473 TGCTGAATCCATGGGCAGGCAAGAGACAAC-CGGCGAACTGAAACATCTTAGTAGCCAGA 1415 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCC 250 |||||||||| ||| | ||||| || ||||| |||||||||||||||| |||| Sbjct 1414 GGAAAAGAAAGCAAAAGTGATTCTCATAGTAGCGGCGAGCGAAATGGGAATAGCC 1360 >seq26855 Length=3797 Score = 102 bits (112), Expect = 1e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 140 TGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAA 199 |||||||||||| | |||||||| ||| ||||||||||||||||||| | | ||||| Sbjct 1722 TGAATACATAGGGGTTAGAAGCGAACTCGGGGAACTGAAACATCTAAGTACCCGAAGGAA 1663 Query 200 AAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 | || ||||||||||| ||| ||||| |||||||||| Sbjct 1662 AGGACATCAACCGAGACTCCGTCAGTAGCGGCGAGCGAA 1624 Score = 95.1 bits (104), Expect = 2e-17 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| ||||| |||||||||| |||||||||||||||||| || ||||||| Sbjct 1933 AGGGCATCTGGTGAATGCCTTGGCACACACAGGCGATGAAGGACGTGATACGCTGCGATA 1874 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| |||||| || || | |||||||||| ||||||||||||||||||||| Sbjct 1873 AGCCATGGGGAG-CTGCGAATAAGCTTTGATCCGTGGATTTCCGAATGGGGAAACCC 1818 >seq6047 Length=151485 Score = 86.0 bits (94), Expect = 1e-14 Identities = 87/111 (78%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| || || ||||||||| |||||||| |||||| | Sbjct 133536 TGCTGAATCCATGGGCAAGCAAGAGACGACCCGGCGAACTAAAACATCTTAGTAGCCAAA 133595 Query 196 GGAAAAGAAAT--CAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||| ||| ||| | |||||||| ||||| ||| |||||||||||| Sbjct 133596 GGAAAAAAAAGAACAAAAGCGATTCCCATAGTAGCGGCAAGCGAAATGGGA 133646 >seq1308 Length=125535 Score = 80.6 bits (88), Expect = 5e-13 Identities = 135/191 (71%), Gaps = 11/191 (6%) Strand=Plus/Plus Query 62 GCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCC 121 ||| |||||||| | ||| | | | |||||| ||||| |||||| || ||||| Sbjct 83199 GCTTCGGGGAGTT-GAAAATAAGCATAGATCCGAAGATTCCCGAATAGGAAAACC----- 83252 Query 122 CTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGC-GGCGAACTGAAAC 180 ||| | | | | || ||||| |||||| | |||| | | | ||||||||||||| Sbjct 83253 -TTTCGAAC--TAC-TGTTGAATCCATAGGCAGGCAAGACACAATCTGGCGAACTGAAAC 83308 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 |||| ||||||| ||||||||||| ||| | |||| | ||||| ||| ||||| Sbjct 83309 ATCTTAGTAGCTAGAGGAAAAGAAAGCAAAAGTGATTTTCGTAGTAGCAACGAATGAAAT 83368 Query 241 GGGATGAGCCT 251 | || ||||| Sbjct 83369 GAGAGCAGCCT 83379 >seq89489 Length=184534 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 75915 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 75974 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 75975 GGCGAGCGAGAGCGGAT 75991 >seq3677 Length=63360 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 19510 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 19451 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 19450 GGCGAGCGAGAGCGGAT 19434 >seq3354 Length=110323 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 35004 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 35063 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 35064 GGCGAGCGAGAGCGGAT 35080 >seq403 Length=169495 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 18721 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 18780 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 18781 GGCGAGCGAGAGCGGAT 18797 >seq3494 Length=183798 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 ||||||||||||||||| ||||| ||||||||||| ||| | |||||| | ||| Sbjct 178070 GGCGAACTGAAACATCTTAGTAGTCAGAGGAAAAGAAAACAAAAGCTATTCCCGTAATAG 178129 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||||||| || ||| Sbjct 178130 CAGCGAGCGAAATGGGAGGAACCT 178153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917577894240