Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3095 181 8e-41 seq341 178 1e-39 seq58707 114 1e-20 seq5942 93.3 3e-14 seq86400 84.2 2e-11 >seq3095 Length=123113 Score = 181 bits (200), Expect = 8e-41 Identities = 573/875 (65%), Gaps = 20/875 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || | ||| | |||||| |||||||| ||||| || || || || | Sbjct 111012 TGTTCCCAATTCAATATCCCCAAATTTGGGAAATGTACAAGAAGGCAGAGGCCTCGTTTT 111071 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGC 61182 |||||| ||| ||||| ||||||||| | || | | ||||||| || | |||| Sbjct 111072 GGACGGCGGAAGAGGTTGATTTGTCCCAGGATGTACAGCACTGGGATAAATTGACCGAG- 111130 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 | ||| | ||||||||||| ||||| | || || |||||||| || ||||| || || Sbjct 111131 GATGAGAAGCATTTCATTAAGCATGTTCTTGCCTTTTTTGCCGCCTCCGACGGCATTGTT 111190 Query 61243 AATGAGAATTTA-TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTT 61301 |||||| || ||| | | ||| | | ||||| ||| | |||||||||||| ||| Sbjct 111191 TTGGAGAATCTAGCTGGGA-GGTTCATGAAAGAGGTTCAAATCTCGGAGGCGCGTGCTTT 111249 Query 61302 CTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGA 61361 || || |||||||| || || |||||| |||| || |||||||||||| |||| | || Sbjct 111250 TTATGGGTTCCAGATCGCGATTGAGAATATCCATTCCGAGATGTACAGTCTTCTTCTTGA 111309 Query 61362 TACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC 61421 | || || | ||| || ||| | || | ||| | || |||||||| | || Sbjct 111310 GTCCTATATAAAGGATTCGGAGGAGAAGAATCGGCTTTTCCACGCAATCGAGACCGTTCC 111369 Query 61422 GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATT 61481 || | ||| || | |||||| || ||||| | | || | | || Sbjct 111370 TTGTGTTGGGAAGAAGGCCAAGTGGGCCCTCCGCTGGATTGACGGCTCA---GAATCCTT 111426 Query 61482 TGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGC 61541 | ||| || | || || ||||| ||||| || | || ||| ||| || Sbjct 111427 CGCTGAGCGCATACTCGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCGGGAAGCTTCTG 111486 Query 61542 CGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTT 61601 ||| || |||||| | || || |||||| | ||||| || | || || || ||||| Sbjct 111487 CGCGATATTTTGGCTAAAAAAGCGTGGATTAATGCCTGGATTAACTTTTTCAAACGAGTT 111546 Query 61602 GATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCT 61661 || || || || ||||| | || |||||||||||| |||| | || || ||| Sbjct 111547 AATCTCGCGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGCTCTACA---GCCTTCT 111603 Query 61662 ---GGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 | |||| | || | ||||| || || | ||||| ||| ||||| ||| Sbjct 111604 GAGGATGAAAC-TCAG--CGAGGATCGAGTCAAGGGACTTGTTGCTGACGCGGTGGATAT 111660 Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACT 61778 ||| ||||||| | || ||| | || | || |||| |||||| ||| || Sbjct 111661 CGAGAGGGAATTTGTCTGCGATGCTCTTCCTTGTGCCCTGGTCGGAATGAATGGTGATCT 111720 Query 61779 AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG-GTCGATTTGGGTATGAAGC 61837 ||| || || ||||||||||| ||||| | ||| || | | |||| || ||| Sbjct 111721 GATGAGTCAATACATTGAATTTGTAGCCGATAGACTGCTGAATGCACTTGG--ATACAGC 111778 Query 61838 GGA-TCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAG 61896 | | || ||| ||||||||||||||| ||||| |||| | | || || Sbjct 111779 AAATTATACAATGTTCAAAACCCATTTGATTGGATGGAATTGATCAGTTTACAGGGGAAA 111838 Query 61897 ACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || ||||| || ||||| | || || || || || Sbjct 111839 ACAAATTTCTTTGAGAAGAGGGTTGGTGAATACCA 111873 >seq341 Length=228855 Score = 178 bits (196), Expect = 1e-39 Identities = 574/874 (66%), Gaps = 18/874 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || || ||||| | |||||| |||||||| || || || || || || | Sbjct 3345 TGTTTCCAATTCAGTATCCCAAAATTTGGGAAATGTACAAGAAAGCAGAGGCCTCGTTTT 3286 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATC-GAGC 61182 |||||| ||| ||||||||||||||| | || || | ||||||| | | ||| Sbjct 3285 GGACGGCGGAAGAGGTCGATTTGTCCCAGGATATACAGCACTGGGAAAAACTGACTGAG- 3227 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 | || | ||||||||||| || | | || || || ||||| || ||||| ||||| Sbjct 3226 GACGAGAAGCATTTCATTAAGCACATTCTTGCCTTTTTCGCCGCCTCAGACGGCATCGTT 3167 Query 61243 AATGAGAATTTAT-TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTT 61301 ||||| | ||||| ||| | | ||||||| ||| | |||||||| ||| || Sbjct 3166 TTGGAGAACCTCGCTGGAAGGTT-CATGAAGGAGGTTCAAATCTCGGAGGCTCGTGCGTT 3108 Query 61302 CTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGA 61361 || || ||||| || || || |||||| |||| || |||||||||||| |||| | || Sbjct 3107 TTATGGGTTCCAAATCGCGATTGAGAATATCCATTCTGAGATGTACAGTCTTCTTCTTGA 3048 Query 61362 TACGTACATCAGGGAGCGGGCGGA-ACGTGAACGATTGTTCAATGCCATCGAGACGATAC 61420 | || |||| ||| || ||| | | | | || ||| | || |||||||| | | Sbjct 3047 ATCTTATATCAAGGATTCGGAGGAGAAGAATAGGCTT-TTCCACGCAATCGAGACCGTTC 2989 Query 61421 CGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACAT 61480 | ||| || ||| || | |||||| || |||||| | || | | | Sbjct 2988 CTTGTGTGGAGAAGAAGGCCAAGTGGGCCCTCCGCTGGATCGATGGCTCA---GAGTCCT 2932 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 ||| ||| || | || || || || || || || | || ||| ||| || Sbjct 2931 TTGCTGAGCGTATACTCGCCTTCGCTTGCGTTGAAGGGATTTTCTTCTCGGGAAGCTTCT 2872 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 |||||| |||||| | ||||| || ||| | ||||| || | || ||| || |||| Sbjct 2871 GCGCAATATTTTGGCTAAAGAAGCGAGGATTAATGCCTGGATTAACTTTCTCGAACGAGT 2812 Query 61601 TGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC-GCTAT 61659 |||| || || || |||||| | || ||||||||||| ||||| | || | ||| Sbjct 2811 TGATCTCTCGAGATGAGGGCTTACACTGTGATTTTGCGTGCTTGCTCTACAGCCTGCT-G 2753 Query 61660 CTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATC 61719 | |||| | | || ||||| || || | |||| || ||| || ||| || Sbjct 2752 AGGATGAAAC-TGAGT--GAGGATCGAGTCAAGGGGATTATTGCTGATGCCGTAGAAATT 2696 Query 61720 GAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTA 61779 || ||||||| | || || | || | || | || ||||| ||| || Sbjct 2695 GAGAGGGAATTTGTTTGCGAAGCCCTTCCTTGTGCCCTGGTTGGGATGAACGGTGATCTG 2636 Query 61780 ATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG-GTCGATTTGGGTATGAAGCG 61838 ||| ||||| |||||||| || || || || |||||| | | ||||||| ||| Sbjct 2635 ATGAGTCAGTACATTGAATTCGTAGCTGATCGACTGTTGAATGAACTTGGGTA--CAGCA 2578 Query 61839 GA-TCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGA 61897 | | || ||| | ||||||||||||||| ||||| |||| || | || || | Sbjct 2577 AATTATACAATGTGCAAAACCCATTTGATTGGATGGAATTGATCAGTTTGCAGGGGAAAA 2518 Query 61898 CGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||||| || ||||| | || || || || || Sbjct 2517 CGAATTTCTTTGAGAAGAGGGTTGGTGAATACCA 2484 >seq58707 Length=1165 Score = 114 bits (126), Expect = 1e-20 Identities = 218/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCC-TTC 61122 |||| || || ||||| | |||||| |||||||| || || || | || || Sbjct 965 TGTTTCCAATTCAGTATCCCAAAATTTGGAAAATGTACAAGAAAGCAGAGACCTCAGTTT 906 Query 61123 TGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAG 61181 |||| | ||| ||||||||||||||| | || || | ||||||| ||| |||||| Sbjct 905 TGGAGAGCGGAAGAGGTCGATTTGTCCCAGGATATATAGCACTGGGAAAATTTGATCGAG 846 Query 61182 CGGTGAACAACATTTCATTAAACATG-TGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 | || | ||||||||||| || | | ||| | || || ||||| || |||| ||||| Sbjct 845 -GACGAGAAGCATTTCATTAAGCACGTTCTTGTCCTTTTTCGCCGCCTCAGACGATATCG 787 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 | ||||| | | | || | ||||||| ||| | |||||||| ||| | Sbjct 786 TTTTGGAGAACCTCGCCAGAAGATTTATGAAGGAGGTTCAAATCTCGGAGGCTCGTGCGT 727 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 | || || ||||| || || || |||||| |||| || ||||||| |||| |||| | | Sbjct 726 TTTATGGGTTCCAAATCGCGATTGAGAATATCCATTCCGAGATGTTCAGTCTTCTGCTTG 667 Query 61361 ATACGTACATCAGGGA 61376 | | || |||| ||| Sbjct 666 AATCTTATATCAAGGA 651 >seq5942 Length=60911 Score = 93.3 bits (102), Expect = 3e-14 Identities = 196/291 (67%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || || ||||| | |||||| |||||||| || || || | || || | Sbjct 58213 TGTTTCCAATTCAGTATCCCAAAATTTGGGAAATGTACAAGAAAGCAGAGACCTCGTTTT 58272 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC-GTTTATCGAGC 61182 ||| | ||| ||||||||||||||| | || || | | ||||| ||| ||||| Sbjct 58273 GGAGAGCGGAAGAGGTCGATTTGTCCCAGGATATATAGCATTGGGAAAAGTTGATCGAC- 58331 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 || | ||||||||||| || || | | || |||| ||| || || | |||||| Sbjct 58332 ---GAGAAGCATTTCATTAAGCACGTTCTTGTCTTTTTTGTCGCCTCAGATGATATCGTT 58388 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||||| | || | || | || || | ||| | |||||||| ||| || Sbjct 58389 TTGGAGAACCTCCCCAAAAGATTTATGAAGAAGTTTCAAATCTCGGAGGCTCGTGCATTT 58448 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTT 61353 || | ||||| || || || |||||| |||| || |||||||||||| || Sbjct 58449 TATAGGTTCCAAATCGCAATTGAGAATATCCATTCCGAGATGTACAGTCTT 58499 >seq86400 Length=1483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/252 (68%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || || ||||| | |||||| |||||||| || || || | || || | Sbjct 1231 TGTTTCCAATTCAGTATCCCAAAATTTGGAAAATGTACAAGAAAGCAGAGACCTCATTTT 1290 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGC 61182 ||| | ||| ||||||||||||||| | || || | ||||||| ||| |||||| Sbjct 1291 GGAGAGCGGAAGAGGTCGATTTGTCCCAGGATATATAGCACTGGGAAAATTTGATCGAG- 1349 Query 61183 GGTGAACAACATTTCATTAAACATG-TGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGT 61241 | || | ||||||||||| || | | ||| | || || ||||| || |||| |||||| Sbjct 1350 GACGAGAAGCATTTCATTAAGCACGTTCTTGTCCTTTTTCGCCGCCTCAGACGATATCGT 1409 Query 61242 CAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTT 61301 ||||| | | | || | ||||||| ||| | |||||||| ||| || Sbjct 1410 TTTGGAGAACCTCGCCAGAAGATTTATGAAGGAGGTTCAAATCTCGGAGGCTCGTGCGTT 1469 Query 61302 CTACGGCTTCCA 61313 || || ||||| Sbjct 1470 TTATGGGTTCCA 1481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397134267599600