Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq59516 163 7e-36 seq86976 87.8 5e-13 >seq59516 Length=1985 Score = 163 bits (180), Expect = 7e-36 Identities = 259/366 (71%), Gaps = 4/366 (1%) Strand=Plus/Minus Query 36415 CCAAATGAGCAG-CGAAACCCCTATCACCATCGTGGGCAACCTCACCGCCGACCCCGAAC 36473 ||| ||| |||| |||||| |||||| || | |||||||| |||| |||||| || | Sbjct 1300 CCACATG-GCAGGCGAAACGATCATCACCGTCATCGGCAACCTGACCGACGACCCGGAGC 1242 Query 36474 TGCGATATACCAATTCGGGCATTGCCGTCGCCAACTTCACCGTCGCATCCACACCACGCA 36533 | | || ||||||| || || ||||||||||||||||| || || || || | Sbjct 1241 TCAAGTTCACTCCTTCGGGCGCCGCAGTTGCCAACTTCACCGTCGCGTCGACGCCTCGAA 1182 Query 36534 CATTCGACCGGCAAGCCAACGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCTCGG 36593 | |||| || || ||||||| ||||||||||||||||| |||||| | | |||| | | Sbjct 1181 CCCTCGATCGTCAGACCAACGAGTGGAAGGACGGCGAGGCTCTGTTCATTCGCTGCGCCG 1122 Query 36594 TGTGGCGTCAGCCGGCCGAGAACGTGGCCGAATCGCTGGCCAAGGGCATGCGTGTGATCG 36653 ||||| |||| ||||||||||| ||||| |||||| ||||| || || |||| Sbjct 1121 CCTGGCGCCAGCTCGCCGAGAACGTCGCCGAGTCGCTGCAGAAGGGTCAGCAGGTCATCG 1062 Query 36654 TCCAGGGACGTCTCCGGGCGCGCAGCTACGA-CGACCGCGACGGAAACCGTCGCACTGTG 36712 ||||||| | || | |||| |||||| || | | |||||| || |||| Sbjct 1061 TCCAGGGCCCGCTGAGCATCCGCAACTACGAGCGTCAG-GACGGATCGCGCGGCACGAGC 1003 Query 36713 ATCGGGATCGAAGTCGATGACGTGGGCCCGGCGTTGAAGTTTGCCACCGCTACCGTCACC 36772 ||| ||| ||| | || | || ||| || || || || ||||| | |||||| Sbjct 1002 GTCGAGATGACGGTCAACGAGATCGGTCCGTCGCTGCGCTTCGCGACCGCCAAGGTCACC 943 Query 36773 CGCGCC 36778 |||||| Sbjct 942 CGCGCC 937 >seq86976 Length=914 Score = 87.8 bits (96), Expect = 5e-13 Identities = 210/316 (66%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 9299 CGGTGCCCGTGGATCGCGAGTTGGACCCGGCGCCGGCACCTGTCGAGGGCGTCACCGGCC 9358 ||||| |||||||| | | || || ||||| ||||| | ||||| ||||||| | Sbjct 912 CGGTGGCCGTGGATGTCTTGCTGCACTCGGCGGCGGCAGCGGTCGACGGCGTCAGTACCG 853 Query 9359 AGGCGCACGACGTGGAAGGGATCCATCACCGTGACCGCGTCCGGGATCTCCTCTGCAGCG 9418 || ||||||||||||| |||| ||||| | ||||| || | || | | Sbjct 852 AGCTTGACGACGTGGAAGGCGTCCAGCACCGCGGTGGCGTCTTCGAGGTGGTCGTCGATG 793 Query 9419 GCGGTCTTGAACCCGGTGAAGCCGTCCATCGCGACCACCTCGACCGCGTCACGGAAGGCG 9478 ||| ||||| | ||| ||| ||||| | | |||||| ||| | | ||||| ||| Sbjct 792 GCGTTCTTGTAGCCGTGGAACGGGTCCAGGGTGGCCACCTGAACCCGGGCGCGGAACGCG 733 Query 9479 TCGTCGCGGTCGGCGAGCCAGGTCTTGAACGCC--GCCTTCGACCGGCCCTCGACCATGT 9536 ||| ||||| || | |||||| | | ||| ||| ||||||||| |||| || Sbjct 732 TCGCCGCGGGCGTCCAGCCAGTCGGCGTAGGCCTTGCC--CGACCGGCCGGGCACCAGGT 675 Query 9537 CCAGCAGCCTTGCTGGGCCGGCGCCATCGCGGACCGGGGTGAGGTCGATGATCACGGTGA 9596 ||||||| | || || || || | || | |||||||||||| || |||| | Sbjct 674 CCAGCAGTCGGGCGTGGACGCGTCCGTGCTGGTCGCGGGTGAGGTCGACCATGCCGGTCA 615 Query 9597 CGTACTTGTCGCCACG 9612 | |||| ||| || Sbjct 614 GCTCCTTGGGGCCCCG 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126591691024860