Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_033276.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq3439 96.9 6e-17 seq3283 91.5 3e-15 seq54129 82.4 1e-12 seq4104 80.6 5e-12 seq35612 78.8 2e-11 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1677 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATATGAACTGGCTTTCCG 1736 ||||| ||||||| || | |||| | ||||| ||||||||||| |||||||| |||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1737 TATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTT----- 1791 || || | |||| ||||| | | || || || | ||| | || | || | Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1792 -TTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATT 1840 ||| ||||| |||| ||| ||||| |||||||| ||||| || ||||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1677 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATATGAACTGGCTTTCCG 1736 ||||| |||||||| || | |||| | ||||| ||||||||||| |||||||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1737 TATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTT----- 1791 || || | ||| ||||| | | || || || | ||| | || | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1792 -TTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATT 1840 ||| ||||| |||| |||||| || |||||||| ||||| || ||||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1677 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATATGAACTGGCTTTCCG 1736 ||||| |||||||| || | |||| | ||||| ||||||||||| |||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1737 TATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTT----- 1791 || || | ||| || |||| || || || | ||| | || | | || | Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1792 -TTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATT 1840 ||| ||||| |||| ||| || || |||||||| ||||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq4104 Length=64936 Score = 80.6 bits (88), Expect = 5e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1605 GCATTTTTTAAAGCCCAATTTTTGAGTGCAGAATTCTTCTCCTCGTCCAGATACTCTTTA 1664 ||||||| || || |||| |||| ||||| |||| |||| || |||| Sbjct 20902 GCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAACGTTTTA 20843 Query 1665 TAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATATGA 1724 ||| ||| |||||| |||||||| || | |||| | ||||| ||||||||||| ||| Sbjct 20842 TAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGA 20783 Query 1725 ACTGGCTTTCCGTATTT 1741 ||||| |||||||| || Sbjct 20782 ACTGGTTTTCCGTACTT 20766 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1661 TTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1720 ||||||| ||| ||||| |||||||| || | |||| | ||||| ||||||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1721 ATGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCA 1756 |||||||| |||||||| || | |||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8682933826840